View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_low_49 (Length: 394)
Name: NF3002_low_49
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 28 - 378
Target Start/End: Original strand, 34691090 - 34691438
Alignment:
| Q |
28 |
aagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691090 |
aagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtc |
34691189 |
T |
|
| Q |
128 |
ccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattg |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34691190 |
ccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaacttg--catagaaatgtcaattg |
34691287 |
T |
|
| Q |
228 |
tgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaat |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691288 |
tgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaat |
34691387 |
T |
|
| Q |
328 |
ggcactcttttcaatacctccaagcttgtaaatcaaatgaccagccgtagt |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691388 |
ggcactcttttcaatacctccaagcttgtaaatcaaatgaccagccgtagt |
34691438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 28 - 378
Target Start/End: Original strand, 34713502 - 34713850
Alignment:
| Q |
28 |
aagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713502 |
aagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtc |
34713601 |
T |
|
| Q |
128 |
ccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattg |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34713602 |
ccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaacttg--catagaaatgtcaattg |
34713699 |
T |
|
| Q |
228 |
tgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaat |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713700 |
tgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaat |
34713799 |
T |
|
| Q |
328 |
ggcactcttttcaatacctccaagcttgtaaatcaaatgaccagccgtagt |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713800 |
ggcactcttttcaatacctccaagcttgtaaatcaaatgaccagccgtagt |
34713850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 29 - 378
Target Start/End: Original strand, 16232434 - 16232787
Alignment:
| Q |
29 |
agagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcc |
128 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
16232434 |
agagcatgttcccaggtctgaccatccttagaccaaccagcttgcaaaccgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcc |
16232533 |
T |
|
| Q |
129 |
cggtgctcatgttcttaa----tgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaa |
224 |
Q |
| |
|
|| || |||||||||||| ||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16232534 |
cgatgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaa |
16232633 |
T |
|
| Q |
225 |
ttgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctc |
324 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16232634 |
ttgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcatcttcatctcagcagcttctttcccaagtgcctc |
16232733 |
T |
|
| Q |
325 |
aatggcactcttttcaatacctccaagcttgtaaatcaaatgaccagccgtagt |
378 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
16232734 |
aatggcactcttttgaatacctccaagcttgtaaagcaaatgaccggcagtagt |
16232787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 369
Target Start/End: Original strand, 33861206 - 33861443
Alignment:
| Q |
135 |
tcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatacc |
234 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| |||| | | |||| | |||||||||| || | |||||||| |||||| | |||||| |
|
|
| T |
33861206 |
tcatgttcttaatataatccctgtgtccaggggcatcaatgacagtgtaccggtactggtttgtctcaaaattacgcatagaaacgtcaatggagatacc |
33861305 |
T |
|
| Q |
235 |
tctttcacgctcagcgttgagcttgtcaagcaccca---agcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggca |
331 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||| ||||||||||||||||| ||| | |||| ||||||||||| | |||| |||||| || |
|
|
| T |
33861306 |
tctttcacgctcagcctcgagcttgtcaagaacccaattagcatacttgaatgaacacttgtcgatctgagcagcttcttcctcaagactgtcaatgaca |
33861405 |
T |
|
| Q |
332 |
ctcttttcaatacctccaagcttgtaaatcaaatgacc |
369 |
Q |
| |
|
||| ||||||| ||||||||||| | ||||||||| |
|
|
| T |
33861406 |
tgcttgtcaatacatccaagcttgtggagcaaatgacc |
33861443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 28 - 378
Target Start/End: Complemental strand, 38137882 - 38137532
Alignment:
| Q |
28 |
aagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtc |
127 |
Q |
| |
|
|||||||||||| |||||||||| | || ||| |||||||| |||| | ||| || ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38137882 |
aagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtc |
38137783 |
T |
|
| Q |
128 |
ccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattg |
227 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||| ||| |||||||||||| | |
|
|
| T |
38137782 |
ccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatag |
38137683 |
T |
|
| Q |
228 |
tgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaat |
327 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| || |||| || ||||||| |||||||||| ||||| |||||| |
|
|
| T |
38137682 |
tgatacctctttcacgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat |
38137583 |
T |
|
| Q |
328 |
ggcactcttttcaatacctccaagcttgtaaatcaaatgaccagccgtagt |
378 |
Q |
| |
|
| || |||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
38137582 |
gacatccttttcaatacctccaagtttgtagatcaaatgaccagcagtagt |
38137532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 29 - 371
Target Start/End: Original strand, 43045711 - 43046053
Alignment:
| Q |
29 |
agagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcc |
128 |
Q |
| |
|
||||||||||| | ||||||||||| |||||| ||| ||| ||||| | |||||| |||||||||| |||||| ||||| ||||||||||| || | |
|
|
| T |
43045711 |
agagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttc |
43045810 |
T |
|
| Q |
129 |
cggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgt |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||| || | || ||||||||| || |
|
|
| T |
43045811 |
cggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggt |
43045910 |
T |
|
| Q |
229 |
gatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatg |
328 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
43045911 |
gatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatg |
43046010 |
T |
|
| Q |
329 |
gcactcttttcaatacctccaagcttgtaaatcaaatgaccag |
371 |
Q |
| |
|
||| ||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
43046011 |
acacgcttgtcaatacctccaagcttgtagatcaagtgaccag |
43046053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 89 - 375
Target Start/End: Complemental strand, 7891005 - 7890719
Alignment:
| Q |
89 |
gaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaat |
188 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| | || ||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
7891005 |
gaatcaatgataagaacagcacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcgga |
7890906 |
T |
|
| Q |
189 |
acttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacg |
288 |
Q |
| |
|
| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7890905 |
agttggttgtctcaaacttccacagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaatg |
7890806 |
T |
|
| Q |
289 |
cttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccagccgt |
375 |
Q |
| |
|
| | ||||||||||||||||||||| ||| | || ||| || |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7890805 |
cctgttcatctcagcagcttctttctcaaatctatcgatgacatccttttcaatacctccaagcttgtagatcaaatgaccagccgt |
7890719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 29 - 371
Target Start/End: Original strand, 43084139 - 43084481
Alignment:
| Q |
29 |
agagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcc |
128 |
Q |
| |
|
||||||||||| | ||||||||||| |||||| ||| ||| ||||| | |||||| |||||||||| |||||| ||||| ||||||||||| || | |
|
|
| T |
43084139 |
agagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttc |
43084238 |
T |
|
| Q |
129 |
cggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgt |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||| || | || ||||||||| || |
|
|
| T |
43084239 |
cggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggt |
43084338 |
T |
|
| Q |
229 |
gatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatg |
328 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||| |
|
|
| T |
43084339 |
gatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctctatg |
43084438 |
T |
|
| Q |
329 |
gcactcttttcaatacctccaagcttgtaaatcaaatgaccag |
371 |
Q |
| |
|
||| ||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
43084439 |
acacgcttgtcaatacctccaagcttgtagatcaagtgaccag |
43084481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 82 - 371
Target Start/End: Complemental strand, 45983680 - 45983391
Alignment:
| Q |
82 |
agtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtg |
181 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45983680 |
agtagtggaatcaatgacgagaacagcacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtg |
45983581 |
T |
|
| Q |
182 |
aagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttga |
281 |
Q |
| |
|
|| |||||| ||||||||||||| ||| | |||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45983580 |
cagttgtacttgtttgtctcaaacttcgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatacttga |
45983481 |
T |
|
| Q |
282 |
atgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccag |
371 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||| ||||||| ||||||| | ||||| |||||| |||| ||||||||||||| |
|
|
| T |
45983480 |
atgaacgcttgttcatcttagcagcttctttctcaagactctcaatgacactcttgtgaatacatccaagtttgtggatcaaatgaccag |
45983391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 82 - 371
Target Start/End: Complemental strand, 45993460 - 45993171
Alignment:
| Q |
82 |
agtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtg |
181 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
45993460 |
agtagtggaatcaatgatgagaacagcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtg |
45993361 |
T |
|
| Q |
182 |
aagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttga |
281 |
Q |
| |
|
||| |||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45993360 |
cagctgtacttgtttgtctcaaacttcgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcacccaagcatacttga |
45993261 |
T |
|
| Q |
282 |
atgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccag |
371 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| ||| ||| ||||||| | ||||| |||||| |||| || |||||||||| |
|
|
| T |
45993260 |
atgaacgcttgatcatctcagcagcttctttctcaagactctcgatgacactcttgtgaatacatccaagtttgtggatgaaatgaccag |
45993171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 89 - 372
Target Start/End: Complemental strand, 7888740 - 7888457
Alignment:
| Q |
89 |
gaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaat |
188 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| || | ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
7888740 |
gaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgtccgggggcatcaatgagagtgcagcagt |
7888641 |
T |
|
| Q |
189 |
acttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacg |
288 |
Q |
| |
|
| ||||||||| |||||| || | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7888640 |
agctggttgtctgaaacttccaaagagaaatgtcaattgtgatacctctttcacgctcagccttgagtttgtcaagcacccaagcatacttgaataaacg |
7888541 |
T |
|
| Q |
289 |
cttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccagc |
372 |
Q |
| |
|
| || |||||||||||||||||| ||||| ||| ||| || |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7888540 |
tctgtttatctcagcagcttctttctcaagtttctcgatgacatccttttcaatacctccaagcttgtagatcaaatgaccagc |
7888457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 29 - 371
Target Start/End: Complemental strand, 43066696 - 43066354
Alignment:
| Q |
29 |
agagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcc |
128 |
Q |
| |
|
||||||||||| | ||||||||||| |||||| ||| ||| ||||| | |||||| |||||||||| |||||| ||||| ||||||||||| || | |
|
|
| T |
43066696 |
agagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttc |
43066597 |
T |
|
| Q |
129 |
cggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgt |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||| || | || ||||||||| || |
|
|
| T |
43066596 |
cggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggt |
43066497 |
T |
|
| Q |
229 |
gatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatg |
328 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
43066496 |
gatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatg |
43066397 |
T |
|
| Q |
329 |
gcactcttttcaatacctccaagcttgtaaatcaaatgaccag |
371 |
Q |
| |
|
||| ||| |||||||||||||| ||||| || || ||||||| |
|
|
| T |
43066396 |
acacgcttgtcaatacctccaagtttgtagattaagtgaccag |
43066354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 83 - 369
Target Start/End: Original strand, 3301048 - 3301334
Alignment:
| Q |
83 |
gtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtga |
182 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3301048 |
gtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgc |
3301147 |
T |
|
| Q |
183 |
agcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaa |
282 |
Q |
| |
|
|| | ||||| || ||||||||||| |||| || |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
3301148 |
agtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagcatacttgaa |
3301247 |
T |
|
| Q |
283 |
tgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgacc |
369 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| |||||| ||| ||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
3301248 |
tgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtagatcaagtgacc |
3301334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 43045258 - 43045576
Alignment:
| Q |
29 |
agagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcc |
128 |
Q |
| |
|
||||||||||| | ||||||||||| |||||| ||| ||| ||||| | |||||| |||||||||| |||||| ||||| ||||||||||| || | |
|
|
| T |
43045258 |
agagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttc |
43045357 |
T |
|
| Q |
129 |
cggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgt |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||| || | || ||||||||| || |
|
|
| T |
43045358 |
cggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggt |
43045457 |
T |
|
| Q |
229 |
gatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatg |
328 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
43045458 |
gatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatg |
43045557 |
T |
|
| Q |
329 |
gcactcttttcaatacctc |
347 |
Q |
| |
|
||| ||| |||||||||| |
|
|
| T |
43045558 |
acacgcttgtcaatacctc |
43045576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 34 - 372
Target Start/End: Original strand, 51291885 - 51292222
Alignment:
| Q |
34 |
atgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtg |
133 |
Q |
| |
|
|||||| | ||||||||||| |||||| |||||||| || || | ||| || ||||||| || ||||| | |||||||||||||| | | ||||| | |
|
|
| T |
51291885 |
atgttcaccggtctgaccatccttagaataaccagcttcaaacccgccagttgtggaatcaaggatgagaataacacagtcagcttggaacggcccggcg |
51291984 |
T |
|
| Q |
134 |
ctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatac |
233 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||| | | |||||| |||| ||||||||| | | |||||||||||||||||||| |
|
|
| T |
51291985 |
atcatgttcttaatgaaattcccatgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtgatac |
51292083 |
T |
|
| Q |
234 |
ctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcact |
333 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||| ||||| ||||||| || | |
|
|
| T |
51292084 |
ctctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcatctcagtagcttctttctcaagtctctcaatgtcatt |
51292183 |
T |
|
| Q |
334 |
cttttcaatacctccaagcttgtaaatcaaatgaccagc |
372 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
51292184 |
cttgtcaatacctccaagcttgtagatcaaatgaccagc |
51292222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 370
Target Start/End: Complemental strand, 40034659 - 40034380
Alignment:
| Q |
89 |
gaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaat |
188 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| || ||||| ||||||||| |||||||| ||||||||||||| |||||||||||| || | |
|
|
| T |
40034659 |
gaatcaatgatgagaacagcacagtcagctagggacgtgccggttaacatgttcttgatgaaatc--tgtgtccgggggcgtcaatgagagtgcagtggt |
40034562 |
T |
|
| Q |
189 |
acttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacg |
288 |
Q |
| |
|
| |||||||||||||||||| |||| ||||| |||||||| | |||||||||||||||||| |||||||||||||| |||||||||||||||||||| || |
|
|
| T |
40034561 |
atttggttgtctcaaacttggacatggaaatatcaattgtaacacctctttcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcg |
40034462 |
T |
|
| Q |
289 |
cttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgacca |
370 |
Q |
| |
|
||| ||||||||||||||||||||| ||| | ||||||| || ||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
40034461 |
cttgttcatctcagcagcttctttctcaaatttctcaatgacatcctttttaataccgccaagcttgtagatcaaatgacca |
40034380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 101 - 362
Target Start/End: Complemental strand, 43076737 - 43076477
Alignment:
| Q |
101 |
agaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtct |
200 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| ||| |||||||||||||||||| | ||||||| ||| ||||||||| | | |||| | ||| ||||||| |
|
|
| T |
43076737 |
agaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgttgtct |
43076638 |
T |
|
| Q |
201 |
caaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctc |
300 |
Q |
| |
|
||||||| || | |||||| ||||| || |||||||||||||| ||||| ||||||||||||| | ||| |||||||||| |||| ||| ||| || |
|
|
| T |
43076637 |
caaacttccagagagaaatctcaatggt-atacctctttcacgttcagccctgagcttgtcaaggatccaggcatacttgactgaagtcttacccatttc |
43076539 |
T |
|
| Q |
301 |
agcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatca |
362 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||||| |||| ||||||||| ||||| |||| |
|
|
| T |
43076538 |
agcagcttctatctcaaacttctcaatgacactcttgtcaacacctccaagtttgtagatca |
43076477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 81 - 372
Target Start/End: Original strand, 4620006 - 4620297
Alignment:
| Q |
81 |
tagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagt |
180 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4620006 |
tagtagtagaatcatatacgagaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagt |
4620105 |
T |
|
| Q |
181 |
gaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttg |
280 |
Q |
| |
|
| || | ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
4620106 |
gcagtagtacttggttgtctcaaacttggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttg |
4620205 |
T |
|
| Q |
281 |
aatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccagc |
372 |
Q |
| |
|
||||||| | | || |||||||| ||||||||| ||| | ||||||| || ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
4620206 |
aatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacatcctttttaatacctccaagcttgtagatcaaatgaccagc |
4620297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 43 - 375
Target Start/End: Original strand, 1846670 - 1847002
Alignment:
| Q |
43 |
ggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttc |
142 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||| | || || || ||||||| ||||| ||||||||||||| ||| | |||||| |||||||| |
|
|
| T |
1846670 |
ggtctgaccattcttacaaaaaccagcttcaaaaccaccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggtgatcatgttc |
1846769 |
T |
|
| Q |
143 |
ttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcac |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
1846770 |
ttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaacttccatagagaaatgtcaattgtgatacctctttcac |
1846869 |
T |
|
| Q |
243 |
gctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaat |
342 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| ||| | ||| ||| || ||||||||| |
|
|
| T |
1846870 |
gctcggccttgagcttgtcaagcacccaagcatacttgaatgaacgcctgtttatctcagcagcttctttctcaaatctctcgatgacatccttttcaat |
1846969 |
T |
|
| Q |
343 |
acctccaagcttgtaaatcaaatgaccagccgt |
375 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
1846970 |
acctccaagcttgtagatcaaatgaccagccgt |
1847002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 367
Target Start/End: Original strand, 4297789 - 4298075
Alignment:
| Q |
81 |
tagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagt |
180 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| |||| |||| | || ||| |||||||||||||| | ||||| ||||||||||||||||||| | | |
|
|
| T |
4297789 |
tagtagtggaatcaatgacgagaacatcacagttagctagggacgctccagtggtcatgttcttaatgcattccctatgtccgggggcatcaatgacaat |
4297888 |
T |
|
| Q |
181 |
gaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttg |
280 |
Q |
| |
|
| || |||||| |||||||||||||| ||| |||||||||||||||| |||||||||| | ||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
4297889 |
gcagttgtacttgtttgtctcaaacttggacagagaaatgtcaattgtggcacctctttcatggtcagctttgagtttgtcaagtacccaagcatacttg |
4297988 |
T |
|
| Q |
281 |
aatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatga |
367 |
Q |
| |
|
|| ||| || | || | |||| || || ||||| ||||| ||||||| || ||||||||| ||||| || ||||| | ||||||| |
|
|
| T |
4297989 |
aacgaaggcatgttaacctcaacatctactttctcaagtctctcaatgacatccttttcaatgcctccgagtttgtagagcaaatga |
4298075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 135 - 367
Target Start/End: Complemental strand, 4787425 - 4787193
Alignment:
| Q |
135 |
tcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtgatacc |
234 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| |||||||||| |||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
4787425 |
tcatgttcctaatgtattccctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcacc |
4787326 |
T |
|
| Q |
235 |
tctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactc |
334 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||||||||||||||||||| || || |||| |||||||||| ||||| ||||||| || | |
|
|
| T |
4787325 |
tctttcacgctcacccttgagtttgtcaagcacccaagcatacttgaatgaaggccagttagcctcataagcttctttctcaagtctctcaatgacatcc |
4787226 |
T |
|
| Q |
335 |
ttttcaatacctccaagcttgtaaatcaaatga |
367 |
Q |
| |
|
||| |||| |||||||||||||| | ||||||| |
|
|
| T |
4787225 |
tttccaatgcctccaagcttgtagagcaaatga |
4787193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 89 - 371
Target Start/End: Original strand, 4231791 - 4232073
Alignment:
| Q |
89 |
gaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaat |
188 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| || || || |||||||||||||||||||||||||||| ||||||||||||| |||| || | | |
|
|
| T |
4231791 |
gaatcaatgatgagaacagcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagt |
4231890 |
T |
|
| Q |
189 |
acttggttgtctcaaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacg |
288 |
Q |
| |
|
|||| || ||||||||||| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
4231891 |
acttagtggtctcaaacttccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttaaatgaacg |
4231990 |
T |
|
| Q |
289 |
cttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccag |
371 |
Q |
| |
|
||| ||||||||||||||||||||| ||| |||||| ||| ||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
4231991 |
cttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtagatcaagtgaccag |
4232073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 101 - 308
Target Start/End: Original strand, 16349475 - 16349682
Alignment:
| Q |
101 |
agaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtct |
200 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
16349475 |
agaagagcacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtct |
16349574 |
T |
|
| Q |
201 |
caaacttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctc |
300 |
Q |
| |
|
|||| || |||||||| |||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||| ||| ||| || | ||| |
|
|
| T |
16349575 |
caaaattcaacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaacccacgcatacttgaaagaatccttgtttaactc |
16349674 |
T |
|
| Q |
301 |
agcagctt |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
16349675 |
agcagctt |
16349682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 107 - 371
Target Start/End: Complemental strand, 7529033 - 7528769
Alignment:
| Q |
107 |
gcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaaact |
206 |
Q |
| |
|
||||| ||||| |||||||| || || |||||||||| |||||||| | |||||||| |||||||||| ||| || | |||||||| |||||||| | |
|
|
| T |
7529033 |
gcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaatt |
7528934 |
T |
|
| Q |
207 |
tgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagc |
306 |
Q |
| |
|
| |||| | ||| || || || || ||||||||||||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
7528933 |
tccacaaggcaatatcgatggtaattcctctttcacgctcagccttaagtttgtcaagaacccatgcatacttgaatgaacgcttgttcatctcagcagc |
7528834 |
T |
|
| Q |
307 |
ttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccag |
371 |
Q |
| |
|
||| ||| ||| | ||| || ||| ||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
7528833 |
ttccttctcaaatctctcgatcacacgcttgtcaatacctcctagcttgtagatcaagtgaccag |
7528769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 104 - 371
Target Start/End: Complemental strand, 7519665 - 7519398
Alignment:
| Q |
104 |
acagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgaagcaatacttggttgtctcaa |
203 |
Q |
| |
|
|||||||| ||||| |||||||| || || |||||||||| |||||||| | |||||||| |||||||||| ||| || | |||||||| ||||||| |
|
|
| T |
7519665 |
acagcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaa |
7519566 |
T |
|
| Q |
204 |
acttgcacatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagc |
303 |
Q |
| |
|
| || |||| || ||| ||||| || || ||||||||||||||||| || ||||||||||| ||||| || |||||||| || | ||| ||||||||||| |
|
|
| T |
7519565 |
atttccacaaagcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaaagacctcttgttcatctcagc |
7519466 |
T |
|
| Q |
304 |
agcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccag |
371 |
Q |
| |
|
|||||| ||| | | | ||| || ||| ||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
7519465 |
agcttccttctcgaatctctcgatcacacgcttgtcaatacctcctagcttgtagatcaagtgaccag |
7519398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 230
Target Start/End: Complemental strand, 39242299 - 39242152
Alignment:
| Q |
89 |
gaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgctcatgttcttaatgaa---atccctgtgtccgggggcatca---atgagagtga |
182 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| || | | || ||||| | ||| ||| |||||||| ||| | ||||||| |||| |||| |
|
|
| T |
39242299 |
gaatcaatgacgagaacaacacagtcaggttgggacgttctgttgatcatggtggtaaggaagaaatccctgtctccagaggcatcatcaatgacagtgc |
39242200 |
T |
|
| Q |
183 |
agcaatacttggttgtctcaaacttgcacatagaaatgtcaattgtga |
230 |
Q |
| |
|
|| | ||||| ||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
39242199 |
agtagtactttgttgtctcaaacttggacagagcaatgtcaattgtga |
39242152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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