View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_51 (Length: 386)

Name: NF3002_low_51
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_51
NF3002_low_51
[»] chr4 (5 HSPs)
chr4 (18-376)||(54395946-54396304)
chr4 (86-364)||(23596884-23597162)
chr4 (87-364)||(23588032-23588309)
chr4 (141-198)||(9336356-9336413)
chr4 (168-288)||(35132129-35132249)
[»] chr7 (16 HSPs)
chr7 (113-364)||(8017712-8017963)
chr7 (113-364)||(8102285-8102536)
chr7 (156-335)||(17259902-17260081)
chr7 (156-335)||(17267600-17267779)
chr7 (108-364)||(39985259-39985515)
chr7 (156-288)||(7878108-7878240)
chr7 (156-288)||(8581361-8581493)
chr7 (159-193)||(8537700-8537734)
chr7 (159-205)||(8545297-8545343)
chr7 (153-288)||(8575984-8576119)
chr7 (153-288)||(8590296-8590431)
chr7 (153-203)||(8659021-8659071)
chr7 (141-198)||(10494839-10494896)
chr7 (141-198)||(13333833-13333890)
chr7 (159-288)||(27831250-27831379)
chr7 (159-256)||(29582248-29582345)
[»] chr2 (13 HSPs)
chr2 (153-282)||(12245787-12245916)
chr2 (153-288)||(11999066-11999200)
chr2 (156-288)||(12234351-12234482)
chr2 (141-288)||(16657892-16658039)
chr2 (153-226)||(16662429-16662502)
chr2 (150-214)||(5446218-5446282)
chr2 (162-262)||(17648442-17648542)
chr2 (165-289)||(17717061-17717185)
chr2 (141-256)||(43625058-43625173)
chr2 (162-364)||(17666982-17667184)
chr2 (162-256)||(17718358-17718452)
chr2 (156-205)||(7541887-7541936)
chr2 (156-205)||(14703069-14703118)
[»] chr8 (3 HSPs)
chr8 (156-316)||(12528165-12528325)
chr8 (154-282)||(42325181-42325309)
chr8 (228-289)||(43744549-43744610)
[»] chr1 (2 HSPs)
chr1 (139-205)||(4679015-4679081)
chr1 (159-276)||(15594698-15594815)
[»] chr5 (1 HSPs)
chr5 (159-202)||(28219582-28219625)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 54395946 - 54396304
Alignment:
Q  18 gtaggaatcgtcgtgttccttggaatcaaagtcgtcataacaccaccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54395946 gtaggaatcgtcgtgttccttggaatcaaagtcgtcataacaccaccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatctt 54396045  T
Q  118 gaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttccc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396046 gaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttccc 54396145  T
Q  218 attgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396146 attgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcc 54396245  T
Q  318 cttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttc 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396246 cttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttc 54396304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 86 - 364
Target Start/End: Complemental strand, 23597162 - 23596884
Alignment:
Q  86 aagaggagtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttca 185  Q
    ||||||||||||||| ||||||| |||||| || || || ||||  ||||| ||||||||||| || ||||| || ||||| |||||||||||||| |||    
T  23597162 aagaggagtaacatccagcaacaaaagatcctgtactttctcattgccttcgccgctcaaaatagcagcttggactgcagcgccataagcaacagcctca 23597063  T
Q  186 tcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaactt 285  Q
    |||||||| || ||||| ||||| || ||||||||||||||||| |||||||| |||||||| || |||||||| || ||||| |||||||||||||| |    
T  23597062 tcagggttgatgctcttacaaagttccttcccattgaagaaatcttgcaaaagttgttgaaccttgggaatcctagtcgatccgccaacaagaacaacat 23596963  T
Q  286 catgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccat 364  Q
    ||| ||||    ||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| | ||||||    
T  23596962 catcaacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccat 23596884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 364
Target Start/End: Complemental strand, 23588309 - 23588032
Alignment:
Q  87 agaggagtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcat 186  Q
    |||||||||||||| |||||||  ||||| || || || ||||  || ||||| |||||||| || ||||| || || || ||||| |||||||||||||    
T  23588309 agaggagtaacatccagcaacaacagatcctgcactttctcattgccctcaccactcaaaatagcagcttggacggctgccccatatgcaacagcttcat 23588210  T
Q  187 cagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttc 286  Q
    | ||||| || ||||| |||||||| || |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||||||||||| ||    
T  23588209 cggggttgatgctcttacaaagctcctttccattgaagaaatcttgcaaaagttgttgaaccttgggaatcctagtggatccaccaacaagaacaacatc 23588110  T
Q  287 atgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccat 364  Q
    ||| |||    ||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||||    
T  23588109 atggacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaacagatccat 23588032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 9336413 - 9336356
Alignment:
Q  141 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 198  Q
    |||||||| || ||||||||||| ||||||||||||||||| ||||| ||||| ||||    
T  9336413 ctcaaaatagcagcttgaacagctgcaccataagcaacagcctcatctgggttgatac 9336356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 35132129 - 35132249
Alignment:
Q  168 ccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatc 267  Q
    |||||||| ||||| ||||| |||||||| |||||||| | ||| ||||| ||||| || |  ||||| ||||| || ||||| |||||||| |  || |    
T  35132129 ccataagctacagcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagacc 35132228  T
Q  268 caccaacaagaacaacttcat 288  Q
    | |||||||||||||| ||||    
T  35132229 ctccaacaagaacaacatcat 35132249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 113 - 364
Target Start/End: Complemental strand, 8017963 - 8017712
Alignment:
Q  113 atcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctct 212  Q
    |||||||||||||||||  |||||||| |||||||| |||||||| ||||| ||||||||||||||||| || || ||||| ||||||||||||||||||    
T  8017963 atcttgaaccttttcattgccttcaccactcaaaattgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctct 8017864  T
Q  213 ttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttag 312  Q
    || |||||||||||||| ||||| || || |||||||| ||||| || ||||| || |||||||||||||| |||||||||    |||| || |||||||    
T  8017863 ttaccattgaagaaatcttgcaacagttgctgaactttgggaattctagttgaaccgccaacaagaacaacatcatgaacagagttcttgtccatcttag 8017764  T
Q  313 catcccttagacacttctcaacaggttccatacatttcctaaacaaatccat 364  Q
    |||| || | ||||||||||||||| |||||||| || || |||| ||||||    
T  8017763 catctctcaaacacttctcaacaggctccatacactttctgaacagatccat 8017712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 113 - 364
Target Start/End: Original strand, 8102285 - 8102536
Alignment:
Q  113 atcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctct 212  Q
    |||||||||||| ||||  |||||||| ||||| || || ||||||||||| ||||||||||||||||| || || ||||| || || ||||| |||||     
T  8102285 atcttgaaccttctcatttccttcaccactcaagatagcagcttgaacagcggcaccataagcaacagcctcgtcggggttgatgcttttgcatagctcc 8102384  T
Q  213 ttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttag 312  Q
    || ||||||||||| || ||||| || || |||||||| |||||||| ||||| ||||||||||||||||| ||||||||    ||||| || |||||||    
T  8102385 ttaccattgaagaagtcttgcaacagttgctgaactttgggaatcctagttgaaccaccaacaagaacaacatcatgaactgtgctcttgtccatcttag 8102484  T
Q  313 catcccttagacacttctcaacaggttccatacatttcctaaacaaatccat 364  Q
    |||| || | ||||||||||||||| |||||||| ||||| |||| ||||||    
T  8102485 catctctcaaacacttctcaacaggctccatacacttcctgaacagatccat 8102536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 335
Target Start/End: Original strand, 17259902 - 17260081
Alignment:
Q  156 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 255  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||||| |  || || || ||||||||||||||||| || || || ||||| ||||    
T  17259902 tgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttacccttgaagaaatcctgcaatagttgctgcactttcggaa 17260001  T
Q  256 tccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaaca 335  Q
    |||| |  |||||||||||||| ||||| |||| ||     ||||| ||||||||| |||| || |||||||||||||||    
T  17260002 tcctagaagatccaccaacaaggacaacatcatcaattctgctcttgtcaatcttaccatcactaagacacttctcaaca 17260081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 335
Target Start/End: Original strand, 17267600 - 17267779
Alignment:
Q  156 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 255  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |  || ||||| |||||||| | |||||| || || || ||||| ||||    
T  17267600 tgaacagcagcaccataagcaacagcctcatcagggttgatacttttgcataattccttccccttgaagaagttctgcaatagttgctgcactttcggaa 17267699  T
Q  256 tccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaaca 335  Q
    |||| |  || ||||||||||| ||||| |||| |||    ||||| |||||||||||||| || |||||||||||||||    
T  17267700 tcctagaagacccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaaca 17267779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 364
Target Start/End: Original strand, 39985259 - 39985515
Alignment:
Q  108 agaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaa 207  Q
    |||||||| |||||||| ||||  || ||||| ||||| || || || ||||||||||||||||| |||||||| |||||||| || || |||||||| |    
T  39985259 agaagatcctgaaccttctcattgccctcaccactcaagatagcagcctgaacagcagcaccatatgcaacagcctcatcaggatttatgctcttgcata 39985358  T
Q  208 gctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaat 307  Q
    |||| || || || |||||||| |||||||| |||||||| |||||||| || || || || || ||||| ||||| || || |||    |||| || ||    
T  39985359 gctcctttccgttaaagaaatcttgcaaaagttgttgaacctttggaattctggtagaacctcctacaaggacaacatcgtggacacttttcttgtccat 39985458  T
Q  308 cttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccat 364  Q
    ||| ||||| || | ||| |||||||| || ||||||||||| ||||| | ||||||    
T  39985459 cttggcatctctcaaacatttctcaactggctccatacattttctaaagagatccat 39985515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 7878240 - 7878108
Alignment:
Q  156 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 255  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||  ||||||  || ||||| || || || |||||||| ||||| || |||||  |||    
T  7878240 tgaacagctgcaccataagcaacagcttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcctgcaatagctgctgcactttgagaa 7878141  T
Q  256 tccttgttgatccaccaacaagaacaacttcat 288  Q
    |||| | ||||||||||||||| ||||| ||||    
T  7878140 tcctagatgatccaccaacaagtacaacatcat 7878108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 8581361 - 8581493
Alignment:
Q  156 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 255  Q
    |||| ||||||||||||||||||||| ||||||||||| || |||||||| |  || ||||| | ||| || ||||| || ||||||   ||||| ||||    
T  8581361 tgaatagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttcccctggaaaaactcctgtaatagctgtctcactttaggaa 8581460  T
Q  256 tccttgttgatccaccaacaagaacaacttcat 288  Q
    |||| |  || ||||||||||| ||||| ||||    
T  8581461 tcctagaagaaccaccaacaaggacaacatcat 8581493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 8537700 - 8537734
Alignment:
Q  159 acagcagcaccataagcaacagcttcatcagggtt 193  Q
    |||||||||||||||||||||||||||||||||||    
T  8537700 acagcagcaccataagcaacagcttcatcagggtt 8537734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 8545297 - 8545343
Alignment:
Q  159 acagcagcaccataagcaacagcttcatcagggttaatactcttgca 205  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  8545297 acagctgcaccataagcaacagcctcatcagggttaatgctcttgca 8545343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 8575984 - 8576119
Alignment:
Q  153 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 252  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| || ||||| || |  || ||||| ||||| |  ||||| || ||||||   ||||| |    
T  8575984 gcttggacaacagcaccataagcaacagcctcatcagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttag 8576083  T
Q  253 gaatccttgttgatccaccaacaagaacaacttcat 288  Q
    ||||||| |  || ||||||||||| ||||| ||||    
T  8576084 gaatcctagaagaaccaccaacaaggacaacatcat 8576119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 8590296 - 8590431
Alignment:
Q  153 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 252  Q
    ||||||||||| ||||||||||||||||| ||||| || || || || ||| |||| || |||||  | || || || ||||| ||||| || ||||| |    
T  8590296 gcttgaacagctgcaccataagcaacagcctcatctggattgatgctattgtaaagatccttccccataaaaaagtcttgcaatagctgctgcactttgg 8590395  T
Q  253 gaatccttgttgatccaccaacaagaacaacttcat 288  Q
    ||||||| |  || ||||||||||| ||||| ||||    
T  8590396 gaatcctagaagaaccaccaacaagtacaacatcat 8590431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 8659021 - 8659071
Alignment:
Q  153 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttg 203  Q
    ||||||| ||| ||||||||||||||||| ||||| ||||| |||||||||    
T  8659021 gcttgaagagctgcaccataagcaacagcctcatctgggttgatactcttg 8659071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 10494896 - 10494839
Alignment:
Q  141 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 198  Q
    |||||||| || || |||||||| ||||||||||||||||| ||||| ||||| ||||    
T  10494896 ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 10494839  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 13333890 - 13333833
Alignment:
Q  141 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 198  Q
    |||||||| || || |||||||| ||||||||||||||||| ||||| ||||| ||||    
T  13333890 ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 13333833  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 27831379 - 27831250
Alignment:
Q  159 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatcc 258  Q
    ||||| |||||| |||||||||| |||||||| || || |||||||| |  || || || ||||| || |||  ||| ||||| || ||||| |||||||    
T  27831379 acagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaatcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatcc 27831280  T
Q  259 ttgttgatccaccaacaagaacaacttcat 288  Q
    |||  || ||||||||||| ||||| ||||    
T  27831279 ttgaagagccaccaacaaggacaacatcat 27831250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 29582345 - 29582248
Alignment:
Q  159 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaat 256  Q
    ||||| ||||||||||||||||| ||||||||||| || ||| |||| |  || ||||| ||||| || || ||||| ||||| || ||||| |||||    
T  29582345 acagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatccttccccttgaaaaattcttgcaatagctgatgcactttgggaat 29582248  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 282
Target Start/End: Complemental strand, 12245916 - 12245787
Alignment:
Q  153 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 252  Q
    ||||||||||| || |||||||||||||| || ||||||||||| |||||||| |  || ||||| ||||| || ||||| || |||||||| ||||| |    
T  12245916 gcttgaacagctgccccataagcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcctgtaatagctgttggactttgg 12245817  T
Q  253 gaatccttgttgatccaccaacaagaacaa 282  Q
    ||||||| |  |||||||||||||| ||||    
T  12245816 gaatcctagaagatccaccaacaagtacaa 12245787  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 11999066 - 11999200
Alignment:
Q  153 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 252  Q
    ||||||||||| || |||||||| ||||| |||||||||||||| |||||||| | ||| ||||| ||||| || || || || |||||||| || ||||    
T  11999066 gcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggac-tttg 11999164  T
Q  253 gaatccttgttgatccaccaacaagaacaacttcat 288  Q
    | ||||| |  |||||||||||||| ||||| ||||    
T  11999165 ggatcctagaagatccaccaacaagtacaacatcat 11999200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 12234351 - 12234482
Alignment:
Q  156 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 255  Q
    |||||||| ||  |||||||||| || || |||||||||||||||||||| ||||| ||||| ||||| ||||||||||| || || || ||||| ||||    
T  12234351 tgaacagctgcctcataagcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttgggaa 12234449  T
Q  256 tccttgttgatccaccaacaagaacaacttcat 288  Q
    |||| |  || || |||| ||| ||||||||||    
T  12234450 tcctagaggacccgccaataaggacaacttcat 12234482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 288
Target Start/End: Complemental strand, 16658039 - 16657892
Alignment:
Q  141 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagct 240  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| |  || || || ||||| || || ||||| || |    
T  16658039 ctcaaaatagcagcttgaacagctgcaccgtaagcaacagcttcatccgggttgatacttttgcataaatccttgcccttgaaaaagtcttgcaatagat 16657940  T
Q  241 gttgaacttttggaatccttgttgatccaccaacaagaacaacttcat 288  Q
      || ||||| |||||||| | ||| ||||| ||||||||||| ||||    
T  16657939 cctgcactttgggaatcctagatgagccacccacaagaacaacgtcat 16657892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 16662502 - 16662429
Alignment:
Q  153 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaa 226  Q
    ||||| ||||| || |||||||||||||| ||||||||||| || |||||||| | ||| ||||||||||||||    
T  16662502 gcttgcacagctgccccataagcaacagcctcatcagggttgatgctcttgcacaactccttcccattgaagaa 16662429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 5446282 - 5446218
Alignment:
Q  150 gctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctcttt 214  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||| || |||||| |||||||    
T  5446282 gctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctcttt 5446218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 17648542 - 17648442
Alignment:
Q  162 gcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttg 261  Q
    ||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || || |  |||||||||||||| || |||||||| |||||||| ||||    
T  17648542 gcagcaccatatgcaacagcctcatcgggattaatgctattgcatagctcctttccgtcaaagaaatcctgcaatagttgttgaacctttggaattcttg 17648443  T
Q  262 t 262  Q
    |    
T  17648442 t 17648442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 17717185 - 17717061
Alignment:
Q  165 gcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttg 264  Q
    |||||||| |||||||| ||||| || ||||| |||||||| ||||| || |  || |||||||||||||| || |||||||| |||||||| || || |    
T  17717185 gcaccatatgcaacagcctcatcgggattaatgctcttgcatagctcctttctgttaaagaaatcctgcaatagttgttgaacctttggaattctggtag 17717086  T
Q  265 atccaccaacaagaacaacttcatg 289  Q
    | || || ||||| ||||| |||||    
T  17717085 aacctcctacaaggacaacatcatg 17717061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 43625058 - 43625173
Alignment:
Q  141 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagct 240  Q
    |||||||| || || || ||||| ||||||||||||||||| ||||||||||| || || | |||    || ||||| ||||| || |||||||| ||||    
T  43625058 ctcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagggtttatgctttcgcatgattccttccccttgaaaaactcctgcaacagct 43625157  T
Q  241 gttgaacttttggaat 256  Q
    |||  |||||||||||    
T  43625158 gttttacttttggaat 43625173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 364
Target Start/End: Complemental strand, 17667184 - 17666982
Alignment:
Q  162 gcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttg 261  Q
    |||||||||||  ||||||| || |  || ||||| || ||||| ||||| || || || |||||||||||||| |  |||||||| |||||||| || |    
T  17667184 gcagcaccatacacaacagcctcgttgggattaatgctattgcatagctcctttccgttaaagaaatcctgcaataattgttgaacctttggaattctgg 17667085  T
Q  262 ttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatc 361  Q
    | || || || ||||| ||||| ||||| |||   || || || ||||||||||  || | ||| ||||||||  | ||||||||||||||||| | |||    
T  17667084 tagaacctcctacaaggacaacatcatggacacttcttttgtccatcttagcatttctcaaacatttctcaacttgctccatacatttcctaaagagatc 17666985  T
Q  362 cat 364  Q
    |||    
T  17666984 cat 17666982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 17718452 - 17718358
Alignment:
Q  162 gcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaat 256  Q
    ||||||||||| |||||||| ||||| || ||||| |||||||| || || || || || |||| ||||||| | || |||||||| ||||||||    
T  17718452 gcagcaccatatgcaacagcctcatcgggattaatgctcttgcatagatcctttccgttaaagacatcctgccatagttgttgaacctttggaat 17718358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 7541887 - 7541936
Alignment:
Q  156 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 205  Q
    |||||||| || |||||||||||||| |||||||| ||||| ||||||||    
T  7541887 tgaacagctgccccataagcaacagcctcatcaggattaatgctcttgca 7541936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 14703069 - 14703118
Alignment:
Q  156 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 205  Q
    |||||||| || |||||||| |||||||||||||||||||| || |||||    
T  14703069 tgaacagctgccccataagctacagcttcatcagggttaatgctgttgca 14703118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 12528165 - 12528325
Alignment:
Q  156 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 255  Q
    |||||||| ||||||||||||||||| ||||||||||| || |||||| | | ||| || || ||||| || |||||||| ||||| |  ||||| ||||    
T  12528165 tgaacagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcctgcaatagctgcttcactttgggaa 12528264  T
Q  256 tccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatc 316  Q
    |||| |  || ||||||||||| ||||  ||||  |||  |||||| || |||||||||||    
T  12528265 tcctagacgagccaccaacaagtacaatatcatctacactactcttgtccatcttagcatc 12528325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 282
Target Start/End: Complemental strand, 42325309 - 42325181
Alignment:
Q  154 cttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttgg 253  Q
    |||| |||||||||||| | ||||| |||||||||||||| |  | ||||    |||| || ||||  ||| |||||| |||||| ||||| || |||||    
T  42325309 cttgcacagcagcaccaaaggcaactgcttcatcagggttgacgcccttgtttggctcctttccatcaaagtaatccttcaaaagttgttgtacctttgg 42325210  T
Q  254 aatccttgttgatccaccaacaagaacaa 282  Q
    |||||||||   |||||||||||||||||    
T  42325209 aatccttgtgcttccaccaacaagaacaa 42325181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 43744549 - 43744610
Alignment:
Q  228 tcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatg 289  Q
    |||||||| || ||||| |||||||||||||| |  || ||||||||||||||||| |||||    
T  43744549 tcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatg 43744610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 4679081 - 4679015
Alignment:
Q  139 cgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 205  Q
    |||||||||| || ||||| | ||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  4679081 cgctcaaaatagcagcttggatagctgcaccataagcaacagcctcatctgggttgatactcttgca 4679015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 15594698 - 15594815
Alignment:
Q  159 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatcc 258  Q
    ||||| ||||||||||||||||| ||||||||||| || ||| |||| |  || || || | ||| ||||||| ||| || ||||| ||||| |||||||    
T  15594698 acagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcc 15594797  T
Q  259 ttgttgatccaccaacaa 276  Q
    | |  || ||||||||||    
T  15594798 tagaagacccaccaacaa 15594815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 28219582 - 28219625
Alignment:
Q  159 acagcagcaccataagcaacagcttcatcagggttaatactctt 202  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||    
T  28219582 acagctgcaccataagcaacagcctcatcagggttaatgctctt 28219625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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