View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_52 (Length: 386)

Name: NF3002_low_52
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_52
NF3002_low_52
[»] chr5 (2 HSPs)
chr5 (44-369)||(37718781-37719104)
chr5 (262-366)||(30440415-30440519)
[»] chr3 (2 HSPs)
chr3 (44-369)||(46594459-46594784)
chr3 (59-149)||(25490131-25490221)
[»] chr6 (2 HSPs)
chr6 (44-369)||(4436054-4436379)
chr6 (73-368)||(4092277-4092582)
[»] chr4 (1 HSPs)
chr4 (45-369)||(47521538-47521879)
[»] chr1 (2 HSPs)
chr1 (44-233)||(26496407-26496597)
chr1 (271-311)||(26496351-26496391)
[»] chr8 (1 HSPs)
chr8 (56-96)||(38016318-38016358)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 44 - 369
Target Start/End: Original strand, 37718781 - 37719104
Alignment:
Q  44 taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37718781 taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac 37718880  T
Q  144 taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37718881 taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactgactacaatt 37718980  T
Q  244 ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctaca 343  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37718981 ttgaaatccctctatggc--cactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctaca 37719078  T
Q  344 ccagaatcaagattatcaccaatttt 369  Q
    ||||||||||||||||||||||||||    
T  37719079 ccagaatcaagattatcaccaatttt 37719104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 30440415 - 30440519
Alignment:
Q  262 ttcactataa-aatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatc 360  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  30440415 ttcactataagaatttgtatacgatcactctatcagacacaaatcagatcgaaattataac-tcaacatcaacaaaatctacaccagaatcaagattatc 30440513  T
Q  361 accaat 366  Q
    ||||||    
T  30440514 accaat 30440519  T

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Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 44 - 369
Target Start/End: Original strand, 46594459 - 46594784
Alignment:
Q  44 taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac 143  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46594459 taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac 46594558  T
Q  144 taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt 243  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  46594559 taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactaactacaatt 46594658  T
Q  244 ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctaca 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  46594659 ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaagcaaatcaaaattctaacatcaacattaacaaaatctaca 46594758  T
Q  344 ccagaatcaagattatcaccaatttt 369  Q
    ||||||||||||||||||||||||||    
T  46594759 ccagaatcaagattatcaccaatttt 46594784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 25490221 - 25490131
Alignment:
Q  59 cctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatt 149  Q
    |||||| | |||||| |||||| ||||||| |||  |||||||||||||||| |||||||||| |||||||||  || |||||||| ||||    
T  25490221 cctcaacttagttctagtgatccttttatcaaacggttataatgcaaagtagctttcatcaaagtgaatgacttgtaattgatactgaatt 25490131  T

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Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 44 - 369
Target Start/End: Complemental strand, 4436379 - 4436054
Alignment:
Q  44 taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac 143  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4436379 taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac 4436280  T
Q  144 taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt 243  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  4436279 taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactaactacaatt 4436180  T
Q  244 ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctaca 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  4436179 ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaagcaaatcaaaattctaacatcaacattaacaaaatctaca 4436080  T
Q  344 ccagaatcaagattatcaccaatttt 369  Q
     |||||||||||||||||||||||||    
T  4436079 tcagaatcaagattatcaccaatttt 4436054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 73 - 368
Target Start/End: Complemental strand, 4092582 - 4092277
Alignment:
Q  73 ttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatttcaaacaactaaaaatatcaaat 172  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  4092582 ttgtgatctttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatggttgatactaaatttcaaacaactaaaaatatcacat 4092483  T
Q  173 tcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactactgactacaattttgaaatccctctatggc---------- 261  Q
    |||||||||||||||||||||||| ||||||| |||| ||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||              
T  4092482 tcaatttctataattttgaaaccccttctatggctgactccagtacaggtttgactactattgactacaattttgaaacccccctatggctgattccagg 4092383  T
Q  262 -ttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatc 360  Q
     |||||||||||||||||| |||||||  |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4092382 tttcactataaaatttgtatacggtca--ctatcaaacacaaatcaaatcgaaattctaacatcaatattaacaaaatctacaccagaatcaagattatc 4092285  T
Q  361 accaattt 368  Q
    ||||||||    
T  4092284 accaattt 4092277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 45 - 369
Target Start/End: Complemental strand, 47521879 - 47521538
Alignment:
Q  45 aagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatact 144  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47521879 aagaatgaggcttgcctcaagtaagttcttgtgatttttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatagttgatact 47521780  T
Q  145 aaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactactgactacaatt 243  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||  ||||||| ||| ||||||||||||||||||||||||||    
T  47521779 aaatttcaaacaactaaaaatatcacattcaatttctataattttgaaaccccttctatggttgattccagtacaggtttgactactactgactacaatt 47521680  T
Q  244 ttgaaatccctctatggc----------------ttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaac 327  Q
    |||||| |||||||||||                || ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  47521679 ttgaaacccctctatggctgattccagtacaggtttaactataaaatttgtatacggtcactctatcagacacgaatcaaatcaaaattctaacatcaac 47521580  T
Q  328 attaacaaaatctacaccagaatcaagattatcaccaatttt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47521579 attaacaaaatctacaccagaatcaagattatcaccaatttt 47521538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 26496597 - 26496407
Alignment:
Q  44 taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac 143  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26496597 taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac 26496498  T
Q  144 taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactact 233  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||| ||| ||||||||||||||||    
T  26496497 taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaacccattcaatggctgattccagtacaggtttgactactact 26496407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 26496391 - 26496351
Alignment:
Q  271 aaatttgtaaacggtcactctatcagacacaaatcaaatcg 311  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  26496391 aaatttgtatacggtcactctatcagacacaaatcaaatcg 26496351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 38016318 - 38016358
Alignment:
Q  56 ttgcctcaagtaagttcttgtgatctttttatcgaacaatt 96  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  38016318 ttgcctcaagtaagttcttgtgatctttttattgaacaatt 38016358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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