View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_53 (Length: 385)
Name: NF3002_low_53
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 8201034 - 8201263
Alignment:
| Q |
1 |
cactaaagtattgtagtagtgaatatcattgaaaatgggtcgtgggaagattgagataaagttgattgagaatcctactaacaggcaagtgacatactca |
100 |
Q |
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| T |
8201034 |
cactaaagtattgtagtagtgaagatcattgaaaatgggtcgtgggaagattgagataaagttgattgagaatcctactaacaggcaagtgacatactca |
8201133 |
T |
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| Q |
101 |
aagagaaggaatggtatattcaagaaagcacatgaacttagtgttctatgtgatgctaaggtttcactcatcatgttctccaaaaataacaagatgcatg |
200 |
Q |
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| T |
8201134 |
aagagaaggaatggtatattcaagaaagcacatgaacttagtgttctttgtgatgctaaggtttcactcatcatgttctccaaaaataacaagatgcatg |
8201233 |
T |
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| Q |
201 |
aatacatcacccctggtctatcgtaagtac |
230 |
Q |
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| T |
8201234 |
aatacatcacccctggtctctcgtaagtac |
8201263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 8201330 - 8201406
Alignment:
| Q |
296 |
atattatgttacttgtgaaccagtacaaagaagattattgatcagtatcagaagactttaggggatatagatctgtg |
372 |
Q |
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| T |
8201330 |
atattatgttacttgtgaaccagtacaaagaagattattgatcagtatcagaagactttaggggatatagatctgtg |
8201406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 47271179 - 47271121
Alignment:
| Q |
97 |
ctcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctatgtgatg |
155 |
Q |
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| T |
47271179 |
ctcaaagagaaggaatggtttaatcaagaaagcttatgaactttctgttctatgcgatg |
47271121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 52800089 - 52800177
Alignment:
| Q |
77 |
actaacaggcaagtgacatactcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctatgtgatgctaaggtttc |
165 |
Q |
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| T |
52800089 |
actaaccgacaagtaacttactcaaaacgaaggaatggtcttttcaagaaggctaatgagctcactgttctttgtgatgctaaggtttc |
52800177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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