View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_55 (Length: 381)
Name: NF3002_low_55
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 41887005 - 41886665
Alignment:
| Q |
14 |
atatttggtgaatttcaagaaagcatagttgatccttttgatgcatcttgatttttgttcaggtaaaattatttacataccaaagcatgttggatactcc |
113 |
Q |
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| T |
41887005 |
atatttggtgaatttcaagaaagcataattgatccttttgatgcatcttgatttttgttcaggtaaaataatttacataccaaagcatgttg-------- |
41886914 |
T |
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| Q |
114 |
actcaccttaaaaatgttagattctgttccctaagcaacttatactccacacgtgagggtacctccttaattctttcaagtcttaaataatgaacatgtt |
213 |
Q |
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| T |
41886913 |
-ctcaccttaaaaatgttagattctgttccctacgcaacttatactccacacgtgagggtacctccttaattctttcaagtcttaaataatgaacatgtt |
41886815 |
T |
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| Q |
214 |
cacaatggataaagattctcttcattggaatttcttttctctttttgagaaaataatgggaagctcctgacttactcatctccacattatcaataatagg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41886814 |
cacaatggataaagattctcttcattggaatttcttttctctttttgagaaaataatgggaagctcctgac-tactcatctccacattatcaataatagg |
41886716 |
T |
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| Q |
314 |
actaatagtagatattgataatttatagtaatatgtatcaatgaccaagat |
364 |
Q |
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| T |
41886715 |
actaatagtagatattgataatttatagtaatatgtatcaatgaccaagat |
41886665 |
T |
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