View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_58 (Length: 376)
Name: NF3002_low_58
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 52170803 - 52170450
Alignment:
| Q |
1 |
gtaagtagctgaagaaggatcaacaagggtgtataaaactgatgaattatcactacagtcaacactgtgaaacgtattcggtagagtttcagttgtaaga |
100 |
Q |
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| T |
52170803 |
gtaagtagctgtagaaggatcaacaagggtgtataaaactgatgaattatcactacattcaacactgtgaaacgtattcggtagagtttcagttgtaaga |
52170704 |
T |
|
| Q |
101 |
aggcaatagtaaaacaaagtcacgttagcgacatcatcataaagtttaaacaaactgctattgaatgtgatgttgtcgacaggaacacaaacatcatctc |
200 |
Q |
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| T |
52170703 |
aggcaatagtaaaacaaagtcacgttagcgacatcatcataaagtttaaacaaagtgctattgaatgtgatgttgtcgacaggaacacaaacatcatctc |
52170604 |
T |
|
| Q |
201 |
tcgagtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccattgttaacttggggac |
300 |
Q |
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| T |
52170603 |
tcgagtaatcttccctagtaactctgagcttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccgttgttaacttggggac |
52170504 |
T |
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| Q |
301 |
actgtcctcacatgtgagttccatattaggatcatcattcacaccgcaatactt |
354 |
Q |
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| T |
52170503 |
actgtcctcacatgtgagttccatattaggatcatcattcacaccgcaatactt |
52170450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 31610369 - 31610416
Alignment:
| Q |
220 |
aactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
267 |
Q |
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| T |
31610369 |
aactctgagtctctgtgttgtattgtcccattcaagaatacggtattt |
31610416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 31621194 - 31621257
Alignment:
| Q |
204 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
267 |
Q |
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| T |
31621194 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31621257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 31636189 - 31636252
Alignment:
| Q |
204 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
267 |
Q |
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||||||| || |||| ||| ||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
31636189 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31636252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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