View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_6 (Length: 784)
Name: NF3002_low_6
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 148 - 768
Target Start/End: Complemental strand, 34025266 - 34024646
Alignment:
| Q |
148 |
gaaattgaacttccacggttgggaagtagaacgagtaagaagaagcaagcattgttgctgaagatatagctctagtgggccaccaccgtgattctnnnnn |
247 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34025266 |
gaaattgaacttccacggttgggaagtagaacgagtaagaagaagcaagcattgttgctgaagatatagctctagtgggccaccaccgtgattctaaaaa |
34025167 |
T |
|
| Q |
248 |
nnttacagtgtggtaacattcagttttcacgataacattacgtgcaccttaccgcatacaatctccccccaccgtcctccttatccatttccacctcccc |
347 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34025166 |
aattacagtgtagtaacattcagttttcacgataacattacgtgcaccttaccgcatacaatcttcccccaccgtcctccttatccatttccacctcccc |
34025067 |
T |
|
| Q |
348 |
aatctcaaatcacacacagtatcaaatcatcaaatcccaaattacaaaactaccctcacccttttttctatataaacctcacatacccactattcacact |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34025066 |
aatctcaaatcacacacagtatcaaatcatcaaatcccaaattacaaaactaccctcacccttttttctatataaacctcacatacccactattcacact |
34024967 |
T |
|
| Q |
448 |
cattcatcactatcactctctcacttcatttatcttcaacgcttcaacaatgaaatccaccggaaaaagccacaaatccaccaccggaaaatcctcctcc |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34024966 |
cattcatcactatcactctctcacttcatttatcttcaacgcttcaacaatgaaatccaccggaaaaagccacaaatccaccaccggaaaatcctcctcc |
34024867 |
T |
|
| Q |
548 |
gcatcagaatctcgcaaagatcgcaaatcatcctctggaatgagcggttcaccgaagaaaggaggtcacggagggaagttcacatggatcggatctgatc |
647 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34024866 |
gcatcagaatctcgcaaagatcgcaaatcatcctctggaatgagcggttcaccgaagaaaggaggtcacggagggaagttcacatggatcggatctgatc |
34024767 |
T |
|
| Q |
648 |
accttcagatcggtgctgaaaacggagctgctttggattctaaggatccgaattttgaagatcatgaagaaatcatcgtcgccgacactgacaccgtcgc |
747 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34024766 |
accttcagatcggtgctgaaaacgaagctgctttggattctaaggatccgaattttgaagatcatgaagaaatcatcgtcgccgacactgacaccgtcgc |
34024667 |
T |
|
| Q |
748 |
cgccgctgttaccgtttgatt |
768 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34024666 |
cgccgctgttaccgtttgatt |
34024646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 34025348 - 34025314
Alignment:
| Q |
69 |
taatcgattcaggtttaagcaacctaatcctaaca |
103 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
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|
| T |
34025348 |
taatcgattcaggtttaagcaacctaaccctaaca |
34025314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 489 - 630
Target Start/End: Original strand, 10902099 - 10902238
Alignment:
| Q |
489 |
cttcaacaatgaaatccaccggaaaaagccacaaatccaccaccggaaaatcctcctccgcatcagaatctcgcaaagatcgcaaatcatcctctggaat |
588 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| || || | | ||||||||||||||||||| || ||||| |
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| T |
10902099 |
cttcaacaatgaaatccaacggaaaaagccacaaatccatcaccggaaaatcctc-tccgcgtcggatttt-gcaaagatcgcaaatcatcatcaggaat |
10902196 |
T |
|
| Q |
589 |
gagcggttcaccgaagaaaggaggtcacggagggaagttcac |
630 |
Q |
| |
|
||| |||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
10902197 |
gagtggttcaccgaagaaaggaggccactgagggaagttcac |
10902238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 489 - 579
Target Start/End: Complemental strand, 51791100 - 51791010
Alignment:
| Q |
489 |
cttcaacaatgaaatccaccggaaaaagccacaaatccaccaccggaaaatcctcctccgcatcagaatctcgcaaagatcgcaaatcatc |
579 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||| |
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|
| T |
51791100 |
cttcaacaatgagatccaccggaaaaagccacaaatccatcaccggaaaatcctcctccacgtcggaatctcgcaaagatcgcaaatcatc |
51791010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 55634155 - 55634039
Alignment:
| Q |
489 |
cttcaacaatgaaatccaccggaaaaagccacaaatccaccaccggaaaatcctcctccgcatcagaatctcgcaaagatcgcaaatcatcctctggaat |
588 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||| ||| ||||||||||||||| || |||||||| | ||||||||| ||||||||||||| |
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|
| T |
55634155 |
cttcaacaattaaatcaaccggaaaaagccacaaacccaccgccgaaaaatcctcctccgcgtcgaaatctcgccaggatcgcaaaacatcctctggaat |
55634056 |
T |
|
| Q |
589 |
gagcggttcaccgaaga |
605 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
55634055 |
gagcggttcatcgaaga |
55634039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 16437125 - 16437009
Alignment:
| Q |
489 |
cttcaacaatgaaatccaccggaaaaagccacaaatccaccaccggaaaatcctcctccgcatcagaatctcgcaaagatcgcaaatcatcctctggaat |
588 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||| ||| ||||||||||||||| || |||||||| | ||||||||| ||||||||||||| |
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| T |
16437125 |
cttcaacaattaaatcaaccggaaaaagccacaaacccaccgccgaaaaatcctcctccgcgtcgaaatctcgccaggatcgcaaaacatcctctggaat |
16437026 |
T |
|
| Q |
589 |
gagcggttcaccgaaga |
605 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
16437025 |
gagcggttcatcgaaga |
16437009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 27891169 - 27891053
Alignment:
| Q |
489 |
cttcaacaatgaaatccaccggaaaaagccacaaatccaccaccggaaaatcctcctccgcatcagaatctcgcaaagatcgcaaatcatcctctggaat |
588 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||| ||| ||||||||||||||| || |||||||| | ||||||||| ||||||||||||| |
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|
| T |
27891169 |
cttcaacaattaaatcaaccggaaaaagccacaaacccaccgccgaaaaatcctcctccgcgtcgaaatctcgccaggatcgcaaaacatcctctggaat |
27891070 |
T |
|
| Q |
589 |
gagcggttcaccgaaga |
605 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
27891069 |
gagcggttcatcgaaga |
27891053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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