View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_61 (Length: 372)
Name: NF3002_low_61
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 35903081 - 35903442
Alignment:
| Q |
1 |
atgacatacaaggaaagttttccatttcctttcatcgaaaaagtcacaaaaggacagctgtttgtagaagactcattccttcgagccaaattagctctag |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35903081 |
atgacatccaaggaaagttttccatttcctttcatcgaaaaagtcacaaaaggacagctgtttgtagaagactcattccttcgagccaaattagctctag |
35903180 |
T |
|
| Q |
101 |
taggaagccatcctcttacaatcttctactaagaagtttcaccttttggaggaattttagtttccacgaatacatccactccccttctttcctaaactcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35903181 |
taggaagccatcctcttacaatcttctactaagaagtttcaccttttggaggatttttagtttccacaaatacatccactccccttctttcctaaactcg |
35903280 |
T |
|
| Q |
201 |
gtattgtcgatcaaatctatgatacactaaagtctccgtttctactcttattacaaatcaattcatcttcgtggtgaacatcatgaaggggcatatggtt |
300 |
Q |
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||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35903281 |
gtattgtcgattaaatccatgatacactaaagtctccatttctactcttattacaaatcaattcatcttcgtggtgaacatcatgaaggggcatatggtt |
35903380 |
T |
|
| Q |
301 |
tataatttgagcatcttgcgggccaaacaagacatctactacctccacttgccactcctttg |
362 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35903381 |
tatagcttgagcatcttgcgggccaaacaagacatctactacctccacttgccactcctttg |
35903442 |
T |
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