View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_62 (Length: 371)

Name: NF3002_low_62
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_62
NF3002_low_62
[»] chr1 (19 HSPs)
chr1 (150-362)||(44234348-44234559)
chr1 (23-116)||(44234593-44234686)
chr1 (189-350)||(21790921-21791080)
chr1 (261-362)||(27651636-27651736)
chr1 (251-350)||(29859152-29859253)
chr1 (40-111)||(6690350-6690421)
chr1 (41-111)||(44233258-44233328)
chr1 (42-110)||(14886204-14886272)
chr1 (42-110)||(48302128-48302196)
chr1 (251-338)||(46285278-46285365)
chr1 (42-111)||(21790802-21790871)
chr1 (251-323)||(14886355-14886427)
chr1 (42-110)||(26897070-26897138)
chr1 (40-111)||(2271269-2271340)
chr1 (40-111)||(46284804-46284875)
chr1 (40-110)||(16959553-16959622)
chr1 (42-111)||(6691025-6691094)
chr1 (42-99)||(27652047-27652104)
chr1 (42-111)||(47052396-47052465)
[»] chr8 (10 HSPs)
chr8 (251-350)||(36731807-36731904)
chr8 (251-350)||(39861404-39861502)
chr8 (260-338)||(25187980-25188058)
chr8 (251-338)||(5882136-5882223)
chr8 (290-362)||(17450751-17450822)
chr8 (282-353)||(25129046-25129116)
chr8 (42-111)||(36732019-36732088)
chr8 (40-111)||(5882346-5882417)
chr8 (40-111)||(39861586-39861657)
chr8 (40-108)||(25191447-25191515)
[»] chr4 (4 HSPs)
chr4 (251-338)||(52363485-52363572)
chr4 (44-111)||(42883403-42883470)
chr4 (312-362)||(42883144-42883193)
chr4 (260-338)||(42883198-42883277)
[»] chr6 (6 HSPs)
chr6 (253-362)||(19653563-19653671)
chr6 (40-111)||(19653799-19653870)
chr6 (251-323)||(8993111-8993183)
chr6 (251-323)||(9017558-9017630)
chr6 (40-99)||(19651121-19651180)
chr6 (46-110)||(9280828-9280892)
[»] chr2 (6 HSPs)
chr2 (251-338)||(4776491-4776578)
chr2 (261-362)||(8911378-8911478)
chr2 (290-362)||(20202875-20202946)
chr2 (261-336)||(38956263-38956338)
chr2 (282-353)||(122624-122694)
chr2 (40-108)||(4776297-4776365)
[»] chr3 (10 HSPs)
chr3 (251-348)||(28908366-28908462)
chr3 (42-110)||(41709571-41709639)
chr3 (41-110)||(28908586-28908655)
chr3 (40-111)||(28907936-28908007)
chr3 (40-111)||(53948507-53948578)
chr3 (296-362)||(38798665-38798730)
chr3 (42-111)||(51827614-51827683)
chr3 (290-362)||(53948885-53948956)
chr3 (251-348)||(30834147-30834243)
chr3 (251-323)||(41709723-41709795)
[»] chr7 (7 HSPs)
chr7 (42-110)||(3475506-3475574)
chr7 (290-362)||(30660080-30660151)
chr7 (290-362)||(37422783-37422854)
chr7 (251-323)||(26774454-26774526)
chr7 (42-96)||(26774620-26774674)
chr7 (42-111)||(3474954-3475023)
chr7 (42-111)||(43334661-43334730)
[»] scaffold0155 (1 HSPs)
scaffold0155 (282-353)||(1306-1376)
[»] chr5 (1 HSPs)
chr5 (282-353)||(42520101-42520171)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 150 - 362
Target Start/End: Complemental strand, 44234559 - 44234348
Alignment:
Q  150 ctcttggttaattaacatttgtacaacnnnnnnntaaatttacttgccattttcgttatattttgcaccattgtcatttgatttctcattactannnnnn 249  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  44234559 ctcttggttaattaacatttgtacaacaaaaaa--aaatttacttgccattttcgttatattttgcaccattgtcatttgatttctcattactatttttt 44234462  T
Q  250 n-agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatg 348  Q
      |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44234461 ttagagattctatttactaatttttgttggatcatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatg 44234362  T
Q  349 ctactgatattctt 362  Q
     ||||||| |||||    
T  44234361 ttactgatgttctt 44234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 44234686 - 44234593
Alignment:
Q  23 aggttgtcaaaagacaacctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatggtccg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  44234686 aggttgtcaaaagacaacctaaccattaatccaactttaatatgacgtttttcataaatttattaaatgatcacatgtttgatcaaatgatccg 44234593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 189 - 350
Target Start/End: Original strand, 21790921 - 21791080
Alignment:
Q  189 ttacttgccattttcgttatattttgcacca----ttgtcatttgatttctcattactannnnnnnagagattctatttactgatttttgttggataatc 284  Q
    |||||| ||||||||||||||||||||||||    ||| |||||||||||||   ||||       |||||||||||||||| ||||||||||||| |||    
T  21790921 ttacttaccattttcgttatattttgcaccaatgattgccatttgatttctccc-actatttttttagagattctatttactaatttttgttggattatc 21791019  T
Q  285 tttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgct 350  Q
    |||||||    |||||||| | |||||||||||||| ||||| |||| |||| | |||||||||||    
T  21791020 tttgtat----tttgtattaactactctttcatttgatggatcatataattc-tcgagttcatgct 21791080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 362
Target Start/End: Original strand, 27651636 - 27651736
Alignment:
Q  261 tttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctactgatattc 360  Q
    |||||| || ||||||  || ||||||||||| | |||||||||| ||||||||||||||||||||| || ||||| ||||||||||||| || ||||||    
T  27651636 tttactaatctttgttcaatcatctttgtatcctctttgtattgactactctttcatttgttggatggtagtattc-ttgagttcatgctgctaatattc 27651734  T
Q  361 tt 362  Q
    ||    
T  27651735 tt 27651736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 29859152 - 29859253
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatc---atgtttgtattgattactctttcatttgttggatgatattattctttgagttcat 347  Q
    |||||||||||||||| ||||||||||||| |||||||||||    ||||||||||   |||||||||||||| ||||| |||| |||| ||||||||||    
T  29859152 agagattctatttactaatttttgttggattatctttgtatcctgctgtttgtattagctactctttcatttgatggatcatataattc-ttgagttcat 29859250  T
Q  348 gct 350  Q
    |||    
T  29859251 gct 29859253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 6690350 - 6690421
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||||||||||||||||  ||| || ||||| ||||||||||||| ||||||| |||||||||||    
T  6690350 cctaaccattaatccaactttaatccgacgttgctcatcaatttattaaatgctcacatgcttgatcaaatg 6690421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 44233258 - 44233328
Alignment:
Q  41 ctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||| ||||||||||||||||| |||| | |||||| ||||||||||||| ||||||| |||||||||||    
T  44233258 ctaacaattaatccaactttaatctgacgtctctcatcaatttattaaatgctcacatgcttgatcaaatg 44233328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 14886204 - 14886272
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaat 110  Q
    |||||||||||||||||||||| |||| | |||||| |||| |||||||| ||||||| ||||||||||    
T  14886204 taaccattaatccaactttaatctgacgtctctcatcaattcattaaatgctcacatgcttgatcaaat 14886272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 48302196 - 48302128
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaat 110  Q
    |||||||||||||||||||||| | || | |||||| |||| |||||||| ||||||||||||||||||    
T  48302196 taaccattaatccaactttaatctcacgtctctcatcaattcattaaatgctcacatgtttgatcaaat 48302128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 46285365 - 46285278
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctt 338  Q
    ||||||||||| |||| ||||||||||| | ||||||||||||||||| |||||  ||  | ||||||||||| ||| ||||||||||    
T  46285365 agagattctatatactaatttttgttggcttatctttgtatcatgtttatattggctatgcgttcatttgttgtatggtattattctt 46285278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 21790802 - 21790871
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    |||||||||||||||||||||| | || | |||||| |||| |||||||  ||||||| |||||||||||    
T  21790802 taaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatg 21790871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 14886355 - 14886427
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttg 323  Q
    |||||||||||||||| || ||||||  || |||| |||||| | |||||||||  |||||||||||||||||    
T  14886355 agagattctatttactaatctttgttcaatcatctctgtatcctctttgtattggctactctttcatttgttg 14886427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 26897138 - 26897070
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaat 110  Q
    |||||||||||||||||||||| |||| | |||||| |||| |||||||  ||| ||| ||||||||||    
T  26897138 taaccattaatccaactttaatctgacgtctctcatcaattcattaaatactcatatgcttgatcaaat 26897070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 2271340 - 2271269
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||||||||||||||||  ||| |  ||||| |||| |||| ||| ||||||| |||||||||||    
T  2271340 cctaaccattaatccaactttaatccgacgtccctcatcaattcattagatgttcacatgcttgatcaaatg 2271269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 46284804 - 46284875
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||||||||||||||||  ||| | |||||  |||| |||||||| | ||||| |||||||||||    
T  46284804 cctaaccattaatccaactttaatccgacgtctctcaacaattcattaaatgcttacatgcttgatcaaatg 46284875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 16959553 - 16959622
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaat 110  Q
    |||||||||||||||| ||||||| |||| | |||||| || | |||||||| |||||||||||| |||||    
T  16959553 cctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcacatgtttgaacaaat 16959622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 6691094 - 6691025
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||||||||||||||  ||  | |||||  |||| |||||||  |||||||||||||||||||    
T  6691094 taaccattaatccaactttaatccgatgtctctcaacaattcattaaatactcacatgtttgatcaaatg 6691025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 27652104 - 27652047
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatg 99  Q
    ||||||||||| ||||||||||  ||| |||||||| |||| |||||||| |||||||    
T  27652104 taaccattaattcaactttaatccgacgtttctcatcaattcattaaatgctcacatg 27652047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 47052396 - 47052465
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||| ||||||||||   || | |||||| |||| |||||||| ||||||| |||||||||||    
T  47052396 taaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatg 47052465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 36731904 - 36731807
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgct 350  Q
    |||||||||||||||| ||||||||||||| ||||||||| | |||||||||| | |||||||||||||| ||||| |||| |||| |||||||||||||    
T  36731904 agagattctatttactaatttttgttggattatctttgta-cttgtttgtattaactactctttcatttgatggatcatataattc-ttgagttcatgct 36731807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 39861502 - 39861404
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgct 350  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||   | |||||||||||  ||||| |||| |||| |||||||||||||    
T  39861502 agagattctatttactaatttttgttggattatctttgtatcctgtttgtattagctgctctttcatttaatggatcatataattc-ttgagttcatgct 39861404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 25188058 - 25187980
Alignment:
Q  260 atttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctt 338  Q
    ||||||| |||||| ||||||  |||||||||| |||||||||||   ||||||||||||||||||| |||||||||||    
T  25188058 atttactaatttttcttggatcttctttgtatcctgtttgtattggccactctttcatttgttggataatattattctt 25187980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 5882223 - 5882136
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctt 338  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||| |||||  ||  | ||| ||||||| ||| ||||||||||    
T  5882223 agagattctatttactaatttttgttggcttatctttgtatcatgtttatattggctatgcgttcgtttgttgtatggtattattctt 5882136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 17450751 - 17450822
Alignment:
Q  290 atcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctactgatattctt 362  Q
    ||||| |||||||||| ||||||||||||||||||||  || ||||| ||||||||||||| || ||||||||    
T  17450751 atcatctttgtattgactactctttcatttgttggatagtagtattc-ttgagttcatgctgctaatattctt 17450822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 25129116 - 25129046
Alignment:
Q  282 atctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctact 353  Q
    ||||||||||||||||| |||||  ||| ||||||||||||| ||| |||||||| ||||||||||| ||||    
T  25129116 atctttgtatcatgtttatattggctacgctttcatttgttgtatggtattattc-ttgagttcatggtact 25129046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 36732088 - 36732019
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    |||||||||||||||||||||| | || | |||||| |||| |||||||  ||||||| |||||||||||    
T  36732088 taaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatg 36732019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 5882417 - 5882346
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    |||||||||||||||||| |||||  | | || ||||| |||| |||||||| ||||||| |||||||||||    
T  5882417 cctaaccattaatccaacattaatccgccgttgctcatcaattcattaaatgctcacatgcttgatcaaatg 5882346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 39861657 - 39861586
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    |||||||||||||||||||||||| | || | |||||| |||| |||||||  |||| || |||||||||||    
T  39861657 cctaaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacgtgcttgatcaaatg 39861586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 25191515 - 25191447
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaa 108  Q
    ||||||||||||||||||||||||  ||| |  ||||| |||| | |||||| ||||||| ||||||||    
T  25191515 cctaaccattaatccaactttaatccgacgtccctcatcaattcagtaaatgttcacatgcttgatcaa 25191447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 52363572 - 52363485
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctt 338  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||| |||||  ||| ||||||||||||| ||| ||||||||||    
T  52363572 agagattctatttactaatttttgttggcttatctttgtatcatgtttatattggctacgctttcatttgttgtatggtattattctt 52363485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 42883470 - 42883403
Alignment:
Q  44 accattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    |||||||||||||||||||| |||| |  ||||| |||| |||||||| ||||||| |||||||||||    
T  42883470 accattaatccaactttaatctgacgtccctcatcaattcattaaatgttcacatgcttgatcaaatg 42883403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 42883193 - 42883144
Alignment:
Q  312 tttcatttgttggatgatattattctttgagttcatgctactgatattctt 362  Q
    ||||||||||||||||||||||||| ||||||||||||| || ||||||||    
T  42883193 tttcatttgttggatgatattattc-ttgagttcatgctgctaatattctt 42883144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 42883277 - 42883198
Alignment:
Q  260 atttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttg-ttggatgatattattctt 338  Q
    ||||||| |||||||||||||  | |||| ||| |||||||||||   ||||||||||||| |||||| |||||||||||    
T  42883277 atttactaatttttgttggatcttatttgcatcctgtttgtattggccactctttcatttgtttggataatattattctt 42883198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 19653671 - 19653563
Alignment:
Q  253 agattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctac 352  Q
    |||||||||||| | ||||||||||||| |||| |||||| || ||| ||||  |||||||||||||||| ||||||||||||| ||||||||| ||| |    
T  19653671 agattctatttattaatttttgttggatcatctatgtatcctgattgcattggctactctttcatttgttagatgatattattc-ttgagttcaagctgc 19653573  T
Q  353 tgatattctt 362  Q
    | ||||||||    
T  19653572 taatattctt 19653563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 19653870 - 19653799
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    |||||||||||||||||||||||| |||| | |||||| |||| |||||||| ||| |||||| ||||||||    
T  19653870 cctaaccattaatccaactttaatctgacgtctctcatcaattcattaaatgctcatatgtttaatcaaatg 19653799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 8993111 - 8993183
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttg 323  Q
    |||||||||||||||| || ||||||  || ||||||||||| | |||||||||  |||||||||||||||||    
T  8993111 agagattctatttactaatctttgttcaatcatctttgtatcctctttgtattggctactctttcatttgttg 8993183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 9017558 - 9017630
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttg 323  Q
    |||||||||||||||| || ||||||  || ||||||||||| | |||||||||  |||||||||||||||||    
T  9017558 agagattctatttactaatctttgttcaatcatctttgtatcctctttgtattggctactctttcatttgttg 9017630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 19651121 - 19651180
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatg 99  Q
    ||||| |||||||||||||||||| |||| | |||||| |||| |||||||| |||||||    
T  19651121 cctaatcattaatccaactttaatctgacgtctctcattaattcattaaatgctcacatg 19651180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 9280892 - 9280828
Alignment:
Q  46 cattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaat 110  Q
    |||||||||||||||||| | |  | |||||| ||||||||||||  ||||||| ||||||||||    
T  9280892 cattaatccaactttaatctaaagtctctcatcaatttattaaattctcacatgcttgatcaaat 9280828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 4776491 - 4776578
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctt 338  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||| |||||  ||| ||||||||||||| ||| | ||||||||    
T  4776491 agagattctatttactaatttttgttggcttatctttgtatcatgtttatattggctacgctttcatttgttgtatggtgttattctt 4776578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 362
Target Start/End: Original strand, 8911378 - 8911478
Alignment:
Q  261 tttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctactgatattc 360  Q
    |||||| || ||||||  || |||||| |||| | |||||||||| ||||||||||||||||||||| || ||||| ||||||||||||| || ||||||    
T  8911378 tttactaatctttgttcaatcatctttatatcctctttgtattgactactctttcatttgttggatggtagtattc-ttgagttcatgctgctaatattc 8911476  T
Q  361 tt 362  Q
    ||    
T  8911477 tt 8911478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 20202875 - 20202946
Alignment:
Q  290 atcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctactgatattctt 362  Q
    ||||| |||||||||| ||||||||||||||||||||  || ||||| ||||||||||||| || ||||||||    
T  20202875 atcatctttgtattgactactctttcatttgttggatagtagtattc-ttgagttcatgctgctaatattctt 20202946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 38956263 - 38956338
Alignment:
Q  261 tttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattc 336  Q
    |||||| || ||||||  || ||||||||||| | |||||||||  ||||||||||||||||||||||||| ||||    
T  38956263 tttactaatctttgttccatcatctttgtatcctatttgtattgcctactctttcatttgttggatgatatcattc 38956338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 122694 - 122624
Alignment:
Q  282 atctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctact 353  Q
    ||||||||||||||||| |||||  ||  ||||||||||||| ||| |||||||| ||||||||||| ||||    
T  122694 atctttgtatcatgtttatattggctatgctttcatttgttgtatggtattattc-ttgagttcatggtact 122624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 4776297 - 4776365
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaa 108  Q
    |||||| ||||||||||| |||||  ||| || ||||| |||| |||||||| ||||||| ||||||||    
T  4776297 cctaacaattaatccaacattaatccgacgttgctcatcaattcattaaatgctcacatgcttgatcaa 4776365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 28908462 - 28908366
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatg 348  Q
    |||||||||||||||| ||||||||||  | ||||||||||||||||| |||||  ||| ||||||||||||| ||  |||||||| |||||||||||    
T  28908462 agagattctatttactaatttttgttgtcttatctttgtatcatgtttatattggctacgctttcatttgttgtattgtattattc-ttgagttcatg 28908366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 41709571 - 41709639
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaat 110  Q
    ||||||||||||||||||||||||||| | |||||| |||| |||||||  ||||||||||||||||||    
T  41709571 taaccattaatccaactttaatatgacgtctctcatcaattcattaaatactcacatgtttgatcaaat 41709639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 28908655 - 28908586
Alignment:
Q  41 ctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaat 110  Q
    ||||||||||||||||| |||||  ||| |||||||| |||| |||||||| ||||||| ||||||||||    
T  28908655 ctaaccattaatccaacattaattcgacgtttctcatcaattgattaaatgctcacatgcttgatcaaat 28908586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 28907936 - 28908007
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||||||||||||||||  ||| | |||||  |||| |||||||| ||||||||||||| |||||    
T  28907936 cctaaccattaatccaactttaatccgacgtctctcaacaattcattaaatggtcacatgtttgattaaatg 28908007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 53948578 - 53948507
Alignment:
Q  40 cctaaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    |||||||||||||||||||||||| |||| | ||||   |||| |||||||| ||||||| |||||||||||    
T  53948578 cctaaccattaatccaactttaatctgacgtctctctacaattcattaaatgctcacatgcttgatcaaatg 53948507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 38798730 - 38798665
Alignment:
Q  296 tttgtattgattactctttcatttgttggatgatattattctttgagttcatgctactgatattctt 362  Q
    |||| ||||| ||||||||||||||||||||| || ||||| ||||||||||||| || ||||||||    
T  38798730 tttggattgactactctttcatttgttggatggtagtattc-ttgagttcatgctgctaatattctt 38798665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 51827614 - 51827683
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||||||||||||||  ||| | |||||  |||| |||||||| ||||||| |||||||||||    
T  51827614 taaccattaatccaactttaatccgacgtctctcaacaattcattaaatgctcacatgcttgatcaaatg 51827683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 53948885 - 53948956
Alignment:
Q  290 atcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctactgatattctt 362  Q
    ||||| |||| ||||| ||||||||||||||||||||| || ||||| ||||||| ||||| || ||||||||    
T  53948885 atcatctttgaattgactactctttcatttgttggatggtagtattc-ttgagttaatgctgctaatattctt 53948956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 30834243 - 30834147
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatg 348  Q
    |||||||||||||  | ||||||||||  | ||||| ||||||||||| |||||  ||| ||||||||||||| ||  ||||| || |||||||||||    
T  30834243 agagattctatttgttaatttttgttgacttatcttcgtatcatgtttatattggctacgctttcatttgttgtattgtattactc-ttgagttcatg 30834147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 41709723 - 41709795
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttg 323  Q
    ||||||||||| |||| || ||||||  || ||||||||||| | |||| ||||  |||||||||||||||||    
T  41709723 agagattctatctactaatctttgttcaatcatctttgtatcctctttgcattggctactctttcatttgttg 41709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 3475574 - 3475506
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaat 110  Q
    |||||||||||||||||||||| |||| | |||||| |||| |||||||  ||||||| ||||||||||    
T  3475574 taaccattaatccaactttaatctgacgtctctcatcaattcattaaatactcacatgcttgatcaaat 3475506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 30660080 - 30660151
Alignment:
Q  290 atcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctactgatattctt 362  Q
    ||||| |||||||||| ||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||    
T  30660080 atcatctttgtattgactactctttcatttgttggatggtagtattc-ttgaattcatgctgctaatattctt 30660151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 37422783 - 37422854
Alignment:
Q  290 atcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctactgatattctt 362  Q
    ||||| |||||||||| |||||||| |||||||||||| || ||||| ||||||||||||| || ||||||||    
T  37422783 atcatctttgtattgactactctttgatttgttggatggtagtattc-ttgagttcatgctgctaatattctt 37422854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 26774526 - 26774454
Alignment:
Q  251 agagattctatttactgatttttgttggataatctttgtatcatgtttgtattgattactctttcatttgttg 323  Q
    |||||||||||||| | || ||||||  || ||||||||||| | |||||||||  |||||||||||||||||    
T  26774526 agagattctatttattaatctttgttcaatcatctttgtatcctctttgtattggctactctttcatttgttg 26774454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 26774674 - 26774620
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcac 96  Q
    |||||||||||||||||||||| |||| | |||||| |||| |||||||| ||||    
T  26774674 taaccattaatccaactttaatctgacgtctctcatcaattcattaaatgctcac 26774620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 3474954 - 3475023
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||| ||||||||||   || | |||||| |||| |||||||| ||||||| |||||||||||    
T  3474954 taaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatg 3475023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 43334730 - 43334661
Alignment:
Q  42 taaccattaatccaactttaatatgacatttctcataaatttattaaatgatcacatgtttgatcaaatg 111  Q
    ||||||||||| |||||||||| | || | | |||| |||| |||||||| ||||||| |||||||||||    
T  43334730 taaccattaattcaactttaatctaacgtctatcatcaattcattaaatgctcacatgcttgatcaaatg 43334661  T

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Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 1306 - 1376
Alignment:
Q  282 atctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctact 353  Q
    ||||||||||||||||| |||||  ||| ||||||||||||| ||| |||||||| ||||||||||| ||||    
T  1306 atctttgtatcatgtttatattggctacgctttcatttgttgtatggtattattc-ttgagttcatggtact 1376  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 42520171 - 42520101
Alignment:
Q  282 atctttgtatcatgtttgtattgattactctttcatttgttggatgatattattctttgagttcatgctact 353  Q
    ||||||||||||||||| |||||  ||| ||||||||||||| ||| |||||||| ||||||||||| ||||    
T  42520171 atctttgtatcatgtttatattggctacgctttcatttgttgtatggtattattc-ttgagttcatggtact 42520101  T

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