View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_65 (Length: 353)
Name: NF3002_low_65
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_65 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 353
Target Start/End: Original strand, 447 - 797
Alignment:
| Q |
6 |
tggacatcatcaattgcatcaccattcatgtttcgtgatatcggcaaatcataactcaaagataggatgaattaataatagaatgacaacttcttgtcta |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
447 |
tggacatcatcaattgcatcaccattcatgtttcgtgataacggcaaatcataactcaaagataggatgaattaatagtagaatgacaacttcttgtcta |
546 |
T |
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| Q |
106 |
atacctttgggaattacaagcaaaatctgtctgaaatctccaccaaaaactactactttaccaccaaacaaaatgtctttatttcacttgtcaattgtct |
205 |
Q |
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| T |
547 |
atacctttgggaattatcggcaaaatctgtctgaaatctccatcaaaaaccactgctttaccaccaaacaaaatgtctttatttcacttgtcaattgtct |
646 |
T |
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| Q |
206 |
aaggtattaatttacatcaatatacttggaagatgatctaaaatatgatcacc---caaacaatagttgacnnnnnnnngtgaagagttactatt--gtt |
300 |
Q |
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| T |
647 |
aaggtattaatttacatcaatatgcttggaagatgatctaaaatatgatcaccatacaaaaaaaa--aaaaaaaaaaaagtgaagagttactatttgttt |
744 |
T |
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| Q |
301 |
ttcttcgtcgtgacagtaaaactctagtattatctaaatgcaagtttaagtgc |
353 |
Q |
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| T |
745 |
ttttttgtcttgacagtaaaactctagtattatctaaatgcaagtttaagtgc |
797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 353
Target Start/End: Original strand, 4649430 - 4649780
Alignment:
| Q |
6 |
tggacatcatcaattgcatcaccattcatgtttcgtgatatcggcaaatcataactcaaagataggatgaattaataatagaatgacaacttcttgtcta |
105 |
Q |
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| T |
4649430 |
tggacatcatcaattgcatcaccattcatgtttcgtgataacggcaaatcataactcaaagataggatgaattaatagtagaatgacaacttcttgtcta |
4649529 |
T |
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| Q |
106 |
atacctttgggaattacaagcaaaatctgtctgaaatctccaccaaaaactactactttaccaccaaacaaaatgtctttatttcacttgtcaattgtct |
205 |
Q |
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| T |
4649530 |
atacctttgggaattatcggcaaaatctgtctgaaatctccatcaaaaaccactgctttaccaccaaacaaaatgtctttatttcacttgtcaattgtct |
4649629 |
T |
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| Q |
206 |
aaggtattaatttacatcaatatacttggaagatgatctaaaatatgatcacc---caaacaatagttgacnnnnnnnngtgaagagttactatt--gtt |
300 |
Q |
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| T |
4649630 |
aaggtattaatttacatcaatatgcttggaagatgatctaaaatatgatcaccatacaaaaaaaa--aaaaaaaaaaaagtgaagagttactatttgttt |
4649727 |
T |
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| Q |
301 |
ttcttcgtcgtgacagtaaaactctagtattatctaaatgcaagtttaagtgc |
353 |
Q |
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| T |
4649728 |
ttttttgtcttgacagtaaaactctagtattatctaaatgcaagtttaagtgc |
4649780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 47400095 - 47400155
Alignment:
| Q |
130 |
atctgtctgaaatctccaccaaaaactactactttaccaccaaacaaaatgtctttatttc |
190 |
Q |
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||||||||||| || ||||||||||| || |||||||||||||| ||||| |||||||| |
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| T |
47400095 |
atctgtctgaagtcaccaccaaaaaccacaactttaccaccaaatggaatgtttttatttc |
47400155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 9825404 - 9825372
Alignment:
| Q |
125 |
gcaaaatctgtctgaaatctccaccaaaaacta |
157 |
Q |
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| T |
9825404 |
gcaaaatctgtctaaaatctccaccaaaaacta |
9825372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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