View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_69 (Length: 346)
Name: NF3002_low_69
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 43660135 - 43660460
Alignment:
| Q |
1 |
ctaagtatagagtttactcgctatgaacatgaaacactgattgattctaagtaagaatgtcaagttccataattttcaactcaagttagtcgtaaaaata |
100 |
Q |
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| T |
43660135 |
ctaagtataaagtttactcgctatgaacatgaaacactgattgattctaagtaagaatgttaagttccataattttcaactcaagttagccttaaaaata |
43660234 |
T |
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| Q |
101 |
ttatacttgatgatgaagaaacaagttctatt-aaaacaaactcgagagtcattcacaagggatgaagatacactgcttattcaatcagcaagactcatt |
199 |
Q |
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| T |
43660235 |
ttatacttgatgatggagaaacaagttctattaaaaaaaaactcgagagtcattcacaagggatgaagatacactgcttattcaat---caagactcatt |
43660331 |
T |
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| Q |
200 |
gtttcaaaggatctatttgtggaggtgatnnnnnnnnncagacagcgtctggttaagaatcgtttccaactataactagtatcgtgggcagttaagatag |
299 |
Q |
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| T |
43660332 |
gtttcaaaggatctatttgaggaggtgat-aaaaaaaacagacagcgtctggttaagaatcgtttccaactataactagtatcgtgggcagttaagatag |
43660430 |
T |
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| Q |
300 |
aagcaacatgttgatgacatctaataaact |
329 |
Q |
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| T |
43660431 |
aagcaacatgtcgatgacatctaataaact |
43660460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 34483411 - 34483344
Alignment:
| Q |
9 |
agagtttactcgctatgaacatgaaacactgattgattctaagtaagaatgtcaagttccataatttt |
76 |
Q |
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| T |
34483411 |
agagtttactcgttatgaacatgaaacaccgattggatctatgtcagaatgtcaagttccacaatttt |
34483344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 47097518 - 47097566
Alignment:
| Q |
54 |
agaatgtcaagttccataattttcaactcaagttagtcgtaaaaatatt |
102 |
Q |
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| T |
47097518 |
agaatgtcaagttccacaattttcaactcaagttggtcttgaaaatatt |
47097566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 43788032 - 43788000
Alignment:
| Q |
55 |
gaatgtcaagttccataattttcaactcaagtt |
87 |
Q |
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| T |
43788032 |
gaatgtcaagttccacaattttcaactcaagtt |
43788000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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