View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_7 (Length: 720)

Name: NF3002_low_7
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_7
NF3002_low_7
[»] chr2 (1 HSPs)
chr2 (23-710)||(3638740-3639423)


Alignment Details
Target: chr2 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 23 - 710
Target Start/End: Complemental strand, 3639423 - 3638740
Alignment:
Q  23 cggatttgatgagacgcgcgtggatttcaagacctttggcgtgcgcatgataggaacaacatgctttgagcgcgtgggtgaaggtgtagtgattgtggga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639423 cggatttgatgagacgcgcgtggatttcaagacctttggcgtgcgcatgataggaacaacatgctttgagcgcgtgggtgaaggtgtagtgattgtggga 3639324  T
Q  123 agaagaacaagagagcatttgattgcagaggttgaagaaagctttgccattatcgtgtgattttgaaagaagtttaaggttttgatttaacaattgggga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639323 agaagaacaagagagcatttgattgcagaggttgaagaaagctttgacattatcgtgtgattttgaaagaagtttaaggttttgatttaacaattgggga 3639224  T
Q  223 ttagggtttatgatttgaaattgagcgagcttcgctatttgattcagattctgaggcttcatttgtattcttgttaatctgaagctccatttagtattta 322  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639223 ttagggtttatgatttgaaattgagagagcttcgctatttgattcagattctgaggcttcatttgtattcttgttaatctgaagctccatttagtattta 3639124  T
Q  323 gtttagatgagttgggtggtctcgactcgagagtagtagtaacttgtaacagtcatgcttgagtt---agaagttgggggaaaattgcatttttccctcc 419  Q
    |||||||||||| ||||||||     |||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| ||||||||||||    
T  3639123 gtttagatgagtcgggtggtc-----tcgagagtagtagtaactagtaacagtcatgcttgagttagaagaagttgggggaaaattgtatttttccctcc 3639029  T
Q  420 aacccggaatgtatttgggttataaaatcgtccgggtcgtgtgtgtttaaacgggtcggtccggtttattatgcaaataaaattacccggttttgtttcc 519  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639028 aacccggaatgtatttgggttataaaatcgtccgggtc--gtgtgtttaaacgggtcggtccggtttattatgcaaataaaattacccggttttgtttcc 3638931  T
Q  520 aaaaacacttttgcctcctaagttcatagcttcttcaatcacctctcgtacactgtacgagattcttagtgcaattcgattttgctcatttgaactcttg 619  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  3638930 aaaaacacttttgcctcctaagttcatagcttcttcaattacctctcgtacactgtacgagattcttagtacaattcgattttgctcatttaaactcttg 3638831  T
Q  620 tattcgtttttgtgtgccagtagcgtgtgattctgtgaaatttgttggatagtttgattcaggagaaaaggtttgtagttttatgcctatg 710  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3638830 tattcgtttttgtctgccagtagcgtgtgattctgtgaaatttgttggatagtttgattcaggagaaaaggtttgtagttttatgcctatg 3638740  T

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