View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_low_71 (Length: 343)
Name: NF3002_low_71
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_71 |
 | |
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| [»] scaffold0477 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0477 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 124 - 325
Target Start/End: Original strand, 2149 - 2350
Alignment:
| Q |
124 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2149 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttatttcaactggtctttgaaatttatcacgacacc |
2248 |
T |
|
| Q |
224 |
aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt |
323 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
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|
| T |
2249 |
aacgtaatggcaagtaacttattggaatctcaaatcaatctttatgaaggaatattgtcaatacatgacaacgaaaaataccccaaaactcaaaatgctt |
2348 |
T |
|
| Q |
324 |
gg |
325 |
Q |
| |
|
|| |
|
|
| T |
2349 |
gg |
2350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 1059 - 1171
Alignment:
| Q |
11 |
cacagaccagcatttaatgagtcccc-attagcttgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |
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|
| T |
1059 |
cacacaccagcatttaatgagtcccccattagcttgcaaagcactctttggttaagtactttagagggaaattagca-------tagggctaaacaattg |
1151 |
T |
|
| Q |
110 |
cttgacctaattagttttta |
129 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
1152 |
ctttacctaattagctttta |
1171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 124 - 325
Target Start/End: Original strand, 4651132 - 4651333
Alignment:
| Q |
124 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4651132 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttatttcaactggtctttgaaatttatcacgacacc |
4651231 |
T |
|
| Q |
224 |
aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt |
323 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
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|
| T |
4651232 |
aacgtaatggcaagtaacttattggaatctcaaatcaatctttatgaaggaatattgtcaatacatgacaacgaaaaataccccaaaactcaaaatgctt |
4651331 |
T |
|
| Q |
324 |
gg |
325 |
Q |
| |
|
|| |
|
|
| T |
4651332 |
gg |
4651333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 4650042 - 4650154
Alignment:
| Q |
11 |
cacagaccagcatttaatgagtcccc-attagcttgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |
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|
| T |
4650042 |
cacacaccagcatttaatgagtcccccattagcttgcaaagcactctttggttaagtactttagagggaaattagca-------tagggctaaacaattg |
4650134 |
T |
|
| Q |
110 |
cttgacctaattagttttta |
129 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
4650135 |
ctttacctaattagctttta |
4650154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 124 - 324
Target Start/End: Original strand, 19082740 - 19082940
Alignment:
| Q |
124 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc |
223 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
19082740 |
tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc |
19082839 |
T |
|
| Q |
224 |
aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt |
323 |
Q |
| |
|
|||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19082840 |
aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt |
19082939 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
19082940 |
g |
19082940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 6531970 - 6531916
Alignment:
| Q |
164 |
gtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacg |
218 |
Q |
| |
|
||||| ||||||||||||| | |||||||| |||||||||||||||| |||||| |
|
|
| T |
6531970 |
gtcctacttcactaagcatgacatttactttgactggtctttgaaattcatcacg |
6531916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 124 - 324
Target Start/End: Original strand, 36757904 - 36758104
Alignment:
| Q |
124 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc |
223 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
36757904 |
tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc |
36758003 |
T |
|
| Q |
224 |
aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt |
323 |
Q |
| |
|
|||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36758004 |
aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt |
36758103 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
36758104 |
g |
36758104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 47503705 - 47503648
Alignment:
| Q |
72 |
ggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagttttta |
129 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
47503705 |
ggagggaaattatcatagcaattagggttaagcaattgcttgacttaattagctttta |
47503648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 28336564 - 28336605
Alignment:
| Q |
88 |
agcaattagggctaagcaattgcttgacctaattagttttta |
129 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
28336564 |
agcaattagggttaagcaattgcttgacctaattagctttta |
28336605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 124 - 324
Target Start/End: Original strand, 40109047 - 40109247
Alignment:
| Q |
124 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc |
223 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
40109047 |
tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc |
40109146 |
T |
|
| Q |
224 |
aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt |
323 |
Q |
| |
|
|||||||||||||||||||| | |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40109147 |
aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaagaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt |
40109246 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
40109247 |
g |
40109247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 11483846 - 11483929
Alignment:
| Q |
46 |
caaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagttttta |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11483846 |
caaaacactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagctttta |
11483929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 124 - 324
Target Start/End: Original strand, 16148524 - 16148724
Alignment:
| Q |
124 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc |
223 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
16148524 |
tttttaattaagtccactgtattctccacattctcaataggccctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc |
16148623 |
T |
|
| Q |
224 |
aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt |
323 |
Q |
| |
|
|||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16148624 |
aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt |
16148723 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
16148724 |
g |
16148724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 124 - 324
Target Start/End: Complemental strand, 23303537 - 23303337
Alignment:
| Q |
124 |
tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc |
223 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
23303537 |
tttttaattaagtctactgtattctccatattctcaataggccctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc |
23303438 |
T |
|
| Q |
224 |
aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt |
323 |
Q |
| |
|
|||||||||||||||||||| | |||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
23303437 |
aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaatgaatattgtcaatacatgatgacaaagaataccccaaaactcaaagtgctt |
23303338 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
23303337 |
g |
23303337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 49129959 - 49130066
Alignment:
| Q |
22 |
atttaatgagtccccattagcttgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaatt |
121 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||| ||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49129959 |
atttaatgagttcccattagcttgcaatgcactctttggtttagtgtttaggagggaaattagcatagtaattagggctaagcaattgcttgacctaatt |
49130058 |
T |
|
| Q |
122 |
agttttta |
129 |
Q |
| |
|
|| ||||| |
|
|
| T |
49130059 |
agctttta |
49130066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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