View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_73 (Length: 338)

Name: NF3002_low_73
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_73
NF3002_low_73
[»] scaffold0024 (1 HSPs)
scaffold0024 (37-322)||(35304-35592)
[»] chr6 (10 HSPs)
chr6 (4-265)||(2926840-2927104)
chr6 (4-265)||(2934279-2934543)
chr6 (1-282)||(2997514-2997798)
chr6 (4-265)||(3003909-3004179)
chr6 (4-265)||(2951622-2951886)
chr6 (53-282)||(2659117-2659352)
chr6 (3-257)||(2982551-2982808)
chr6 (39-257)||(2973728-2973949)
chr6 (176-282)||(2964355-2964461)
chr6 (24-148)||(2964188-2964312)
[»] chr7 (2 HSPs)
chr7 (3-148)||(3338860-3339005)
chr7 (175-243)||(3339023-3339091)
[»] chr3 (2 HSPs)
chr3 (25-150)||(49618096-49618221)
chr3 (196-257)||(49618288-49618350)


Alignment Details
Target: scaffold0024 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 37 - 322
Target Start/End: Complemental strand, 35592 - 35304
Alignment:
Q  37 attctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaa---cttgttaagttaatcttaatcgattccggttttat 133  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||| ||| | |||| ||||||   |||||||||||||||||||||||||||||||||||    
T  35592 attctatcttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgttaagttaatcttaatcgattccggttttat 35493  T
Q  134 aattcaacttttttggaaatattttaagaaagatttcctagaaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35492 aattcaacttttttggaaatattttaagaaagatttcctagaaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccc 35393  T
Q  234 tttttcgttattgaaaaaatttacggtctttcgtggagttctacaaatggttcttttcttgaactcactattaattattttcaatattt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35392 tttttcgttattgaaaaaatttacggtctttcgtggagttctacaaatggttcttttcttgaactcactattaattattttcaatattt 35304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 2926840 - 2927104
Alignment:
Q  4 aggcatgtttaaatgacttagtctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttgt 103  Q
    ||||||||||||| ||||||||| ||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  2926840 aggcatgtttaaacgacttagtcggctacatagaatctatcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgt 2926939  T
Q  104 taagttaatcttaatcgattccggttttataattcaacttttttggaaat-attttaagaaag--atttcctagaaccttggttagatgctggtataaga 200  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||| ||  | ||| ||| |   | || |  ||||||||||||||  ||||||||||    
T  2926940 taagttaatcttaatcaattccgcttttataattcaacttttttggacatcctattacgaagggtgtctctttaaaccttggttagataatggtataaga 2927039  T
Q  201 tcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttc 265  Q
       ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2927040 cacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttc 2927104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 2934279 - 2934543
Alignment:
Q  4 aggcatgtttaaatgacttagtctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttgt 103  Q
    ||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2934279 aggcatgtttaaacgacttagtctgctacatagaatctatcttatctgatttcaaacgttgttattctgaaaccctaccattttctcatgatgaacttgt 2934378  T
Q  104 taagttaatcttaatcgattccggttttataattcaacttttttggaaata-ttttaagaaag--atttcctagaaccttggttagatgctggtataaga 200  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||| | | | ||| ||| |   | || |  |||||| ||||||| ||||||||| |    
T  2934379 taagttaattttaatagattccgcttttataattcaacttttttggagagactattatgaagggcgtctctttaaacctttgttagatactggtataaca 2934478  T
Q  201 tcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttc 265  Q
       |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2934479 gacgatttaatgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttc 2934543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 2997798 - 2997514
Alignment:
Q  1 ctgaggcatgtttaaatgacttagtctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaact 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  2997798 ctgaggcatgtttaaatgacttagtatgctacgtagattctatcttatctaatttcaaacgttgttattccgaaaccctaccattttctcatgatgaact 2997699  T
Q  101 tgttaagttaatcttaatcgattccggttttataattcaacttttttggaaata-ttttaagaaagatt--tcctagaaccttggttagatgctggtata 197  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| | || |||    || |   | ||  || | |||| |||||| |||| |||||||    
T  2997698 tgttaagttaatcttaatcgattccggttttataattgaacttttcttgagataccactatggtgggtttgtctttgaactttggttcgatgatggtata 2997599  T
Q  198 agatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttcgtggagttctacaaatg 282  Q
    | | || ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |  |||||||||||||    
T  2997598 acaacaaatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatg 2997514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 3004179 - 3003909
Alignment:
Q  4 aggcatgtttaaatgacttagtctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttgt 103  Q
    ||||||||||||| ||||||||||||||| |||| ||| | |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  3004179 aggcatgtttaaacgacttagtctgctacatagaatctgtcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgt 3004080  T
Q  104 taagttaatcttaatcgattccggttttataattcaacttttttggaaata-ttttaagaaag-------att-tcctagaaccttggttagatgctggt 194  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||| ||  |       ||| || |  ||||||||||||||  ||||    
T  3004079 taagttaatcttaatcgattccgcttttataattcaacttttttggagatactattatgatcgtcggtgcattctctttaaaccttggttagataatggt 3003980  T
Q  195 ataagatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttc 265  Q
    ||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3003979 ataagaaacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttc 3003909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 2951622 - 2951886
Alignment:
Q  4 aggcatgtttaaatgacttagtctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttgt 103  Q
    ||||||||||||| ||||||||   |||| |||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  2951622 aggcatgtttaaacgacttagttgtctacatagaatctatcttatctgatttcaaaagttgttattctgaaaccctaccattttctcatgatgaacttgt 2951721  T
Q  104 taagttaatcttaatcgattccggttttataattcaacttttttggaaat-attttaagaa--agatttcctagaaccttggttagatgctggtataaga 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||  | ||| |||   ||  || |  |||||||||||| | ||||||||| |    
T  2951722 taagttaatcttaatcgattccgcttttataattcaacttttttggacatcctgttatgaaggggagctctttaaaccttggttaggtactggtataata 2951821  T
Q  201 tcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttc 265  Q
       ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2951822 cacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttc 2951886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 53 - 282
Target Start/End: Complemental strand, 2659352 - 2659117
Alignment:
Q  53 tttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttgttaagttaatcttaatcgattccggttttataattcaacttttttggaaa 152  Q
    ||||||| |||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  2659352 tttcaaaagttgttattccgaaaccctaccattttctgataatgaacttgttaagttaatcttaatcgattcctgttttataattcaacttttttggaca 2659253  T
Q  153 tattttaagaaagat---ttccta---gaaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccctttttcgttattg 246  Q
    || | | |  | |||   || |||    ||||||||||||||| |||||||  || ||||||||||||||||||||||||||||||||||||||||||||    
T  2659252 tactattatgatgatgggtttctatttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattg 2659153  T
Q  247 aaaaaatttacggtctttcgtggagttctacaaatg 282  Q
    || ||||||||   ||||| | ||||||||||||||    
T  2659152 aagaaatttacaaactttcatcgagttctacaaatg 2659117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 2982551 - 2982808
Alignment:
Q  3 gaggcatgtttaaatgacttagtctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttg 102  Q
    ||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||| ||||||| |||||||||    
T  2982551 gaggcatctttaaacgacttggtctgctacgtagattctatcttatctgatttcaaacactgttattctgaacccctaccattttctcataatgaacttg 2982650  T
Q  103 ttaagttaatcttaatcgattccggttttataattcaacttttttgga---aatattttaagaaagatttcctagaaccttggttagatgctggtataag 199  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||   |||||| |      | | || |  ||||||||||| |   |  ||||      
T  2982651 ttaagttaatcttaatcgattccgcttttataattcaacttttttggagaaaatattatggtggggctctctttcaaccttggttaaaaagtcttatatt 2982750  T
Q  200 atcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttac 257  Q
    ||  ||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  2982751 atatgatgtactgttacttgaaaatcagcttccctttttcgttattgaaaaaatttac 2982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 39 - 257
Target Start/End: Original strand, 2973728 - 2973949
Alignment:
Q  39 tctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttgttaagttaatcttaatcgattccggttttataattc 138  Q
    ||||| ||||||||||||||| | ||||||||  |||||||| ||| |||||||  |||||||||||||||||| ||||| ||||||||||||||||||     
T  2973728 tctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataattg 2973827  T
Q  139 aacttttttggaaatatt-ttaagaaag--atttcctagaaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccctt 235  Q
    ||| ||| | || ||  | ||  ||| |  || || || ||||||||||| ||  || ||||  ||||||||||||||||||||||||||||||||||||    
T  2973828 aacatttattgagatcctgttgtgaaggtgatctcttaaaaccttggttatataatgatatatcatcagatttattgttacttgaaaatcagcttccctt 2973927  T
Q  236 tttcgttattgaaaaaatttac 257  Q
    ||||||||||||||||||||||    
T  2973928 tttcgttattgaaaaaatttac 2973949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 176 - 282
Target Start/End: Original strand, 2964355 - 2964461
Alignment:
Q  176 accttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttcgtggagttct 275  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||    
T  2964355 accttggttatatgttggtataagatcagatttaatgttacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttct 2964454  T
Q  276 acaaatg 282  Q
    |||||||    
T  2964455 acaaatg 2964461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 2964188 - 2964312
Alignment:
Q  24 gtctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttgttaagttaatcttaatcgatt 123  Q
    |||| |||| ||||| |||| ||||||||||||||| | |||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  2964188 gtctactacatagatgctatcttatctgatttcaaatgctgttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgatt 2964287  T
Q  124 ccggttttataattcaacttttttg 148  Q
    | |||||||||||| ||||||||||    
T  2964288 ctggttttataattgaacttttttg 2964312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 3338860 - 3339005
Alignment:
Q  3 gaggcatgtttaaatgacttagtctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttg 102  Q
    |||||||||||||| ||||| |||| ||||||||| ||||| ||| |||||||||||||||||||||| |||  |||| ||| |||| ||||| ||||||    
T  3338860 gaggcatgtttaaaagacttggtcttctacgtagagtctatcttacctgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttg 3338959  T
Q  103 ttaagttaatcttaatcgattccggttttataattcaacttttttg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3338960 ttaagttaatcttaatcgattccggttttataattcaacttttttg 3339005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 3339023 - 3339091
Alignment:
Q  175 aaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccctttttcgtta 243  Q
    |||||||||| |  | |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  3339023 aaccttggttggtaggtggtatatcatcagatttattgttacttgaaaatcagcttccctttttcgtta 3339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 49618096 - 49618221
Alignment:
Q  25 tctgctacgtagattctatattatctgatttcaaacgttgttattctgaaaccctaccatcttctcatgatgaacttgttaagttaatcttaatcgattc 124  Q
    |||||||| ||||||| || |||||| ||||||| |  | ||||||  ||||||||| || | ||||||||||| ||||||||||||||||||| |||||    
T  49618096 tctgctacatagattccatcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaagttaatcttaattgattc 49618195  T
Q  125 cggttttataattcaacttttttgga 150  Q
    ||| || |||||| | ||||| ||||    
T  49618196 cgggttcataattgagcttttctgga 49618221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 49618288 - 49618350
Alignment:
Q  196 taagatcagatttattgtt-acttgaaaatcagcttccctttttcgttattgaaaaaatttac 257  Q
    |||||| |||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||    
T  49618288 taagattagatttattgtttacttcaaaatcagcttccctatttcgttattgaaaatatttac 49618350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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