View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_low_76 (Length: 321)
Name: NF3002_low_76
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_76 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 28939067 - 28938763
Alignment:
| Q |
1 |
tcatcatagtagctaaatgtaggaccaagttattgaaatattttaatttttgtacctcaggtatatcctaagtcatggactgcaatttatatggcactag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28939067 |
tcattatagtagctaaatgtaggaccaagttattgaaatattttaatttttgtacctcaggtatatcctaagtcatggactgcaatttatatggcactag |
28938968 |
T |
|
| Q |
101 |
acaatgtgggaatgtggaatgtgaggagtgaattttgggcacgacaatatcttggacaacaattctatatgcgagtatattcagatgctggatcaattag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938967 |
acaatgtgggaatgtggaatgtgaggagtgaattttgggcacgacaatatcttggacaacaattctatatgcgagtatattcagatgctggatcaattag |
28938868 |
T |
|
| Q |
201 |
ggatgaatatccaattccaaagaatgctcttctttgtggcaaagcagtgggtagagaaactagaccattatgagaacgtccacacacaatgttaaccaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938867 |
ggatgaatatccaattccaaagaatgctcttctttgtggcaaagcagtgggtagagaaactagaccattatgagaacgtccacacacaatgttaaccaac |
28938768 |
T |
|
| Q |
301 |
aaact |
305 |
Q |
| |
|
||||| |
|
|
| T |
28938767 |
aaact |
28938763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 17134680 - 17134612
Alignment:
| Q |
58 |
caggtatatcctaagtcatggactgcaatttatatggcactagacaatgtgggaatgtggaatgtgagg |
126 |
Q |
| |
|
||||| ||||| ||||||||||||||| | || ||| || | || |||||||||||||||||||||||| |
|
|
| T |
17134680 |
caggtgtatccgaagtcatggactgcactctacatgccattggataatgtgggaatgtggaatgtgagg |
17134612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 17349289 - 17349357
Alignment:
| Q |
58 |
caggtatatcctaagtcatggactgcaatttatatggcactagacaatgtgggaatgtggaatgtgagg |
126 |
Q |
| |
|
||||| ||||| ||||||||||||||| | || ||| || | || |||||||||||||||||||||||| |
|
|
| T |
17349289 |
caggtgtatccaaagtcatggactgcactgtacatgccattggataatgtgggaatgtggaatgtgagg |
17349357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 55297411 - 55297450
Alignment:
| Q |
202 |
gatgaatatccaattccaaagaatgctcttctttgtggca |
241 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
55297411 |
gatgaatatccagtcccaaagaatgctcttctttgtggca |
55297450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 55713983 - 55714036
Alignment:
| Q |
67 |
cctaagtcatggactgcaatttatatggcactagacaatgtgggaatgtggaat |
120 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || |||||||| |||||||||||| |
|
|
| T |
55713983 |
cctaagtcatggacagcaatatacatggctcttgacaatgttggaatgtggaat |
55714036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 8570525 - 8570402
Alignment:
| Q |
56 |
ctcaggtatatcctaagtcatggactgcaatttatatggcactagacaatgtgggaatgtggaatgtgaggagtgaattttgggcacgacaatatcttgg |
155 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||| | |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
8570525 |
ctcaggtatatccaaagtcatggactgctatctatgttccacttgacaatgtgggaatgtggaacttgaggtcagaattttgggcacgacaatatcttgg |
8570426 |
T |
|
| Q |
156 |
acaacaattctatatgcgagtata |
179 |
Q |
| |
|
||||| || |||||||| ||||| |
|
|
| T |
8570425 |
gcaacagttttatatgcgtgtata |
8570402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 53748659 - 53748554
Alignment:
| Q |
59 |
aggtatatcctaagtcatggactgcaatttatatggcactagacaatgtgggaatgtggaatgtgaggagtgaattttgggcacgacaatatcttggaca |
158 |
Q |
| |
|
|||||||||| | |||||||| || |||||| | ||||| ||||| || ||||||||||| |||||| || |||||||||||||| |||||||| || |
|
|
| T |
53748659 |
aggtatatccctattcatggacggctatttatgttgcacttgacaacgttggaatgtggaacttgaggaccgagttttgggcacgacagtatcttggcca |
53748560 |
T |
|
| Q |
159 |
acaatt |
164 |
Q |
| |
|
|||||| |
|
|
| T |
53748559 |
acaatt |
53748554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University