View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_8 (Length: 676)
Name: NF3002_low_8
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 11918556 - 11918228
Alignment:
| Q |
17 |
gatgttccctgatgcatataaggtgttgttccagacttacatgctggctaaagaagctgaatattggcgagagaacactcgtcagaggttggaagctgta |
116 |
Q |
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| T |
11918556 |
gatgttccctgatgcatataaggtgttgttcgagacttacatgctggctaaagaagctgaatattggcgagagaacactcgtcagaggttggaagctgta |
11918457 |
T |
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| Q |
117 |
gatactgatatcacttgggaagtattcagaattgagtatttaaaagtttacaaggaaattaattaaaaatgttctaaaagtttacgaatccggttgaatt |
216 |
Q |
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| T |
11918456 |
gatactgatatcacttgggaagtattcagaattgagtatttaaaagtttacaaggaaattaattaaaaatgttctaaaagtttacgaatccggttgaatt |
11918357 |
T |
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| Q |
217 |
tttctggttgaagaattaaataacaaattattcataaactaatgctcgattagaaaaaggttaaaagtcaaattataaacttttttaattttgagaactt |
316 |
Q |
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| T |
11918356 |
tttctggttgaagaattaaataacaaattattcataaactaatgctcgattagaaaaaggttaaaagtcaaattataaacttttttaatttagagaactt |
11918257 |
T |
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| Q |
317 |
agagaactaatgttgaattagtttggtaga |
346 |
Q |
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| T |
11918256 |
acagaactaatgttgaa-tagtttggtaga |
11918228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 414 - 661
Target Start/End: Original strand, 11909790 - 11910038
Alignment:
| Q |
414 |
gttgattaggattggtgtaaaatat--tttatacattgaatctaagtgatgtaacaaaagaggtcgtattattgggattaagcttcgttaaccaatcgtc |
511 |
Q |
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| T |
11909790 |
gttgattaggattggtgtaaaatatactttatacattgaatctaagtgatgtaacaaaagagatcatattgttgggattaagcttcgttaaccaatcatc |
11909889 |
T |
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| Q |
512 |
taatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacaaagataagatcatcaatttcaactattggagagatttggagcttgagttc |
611 |
Q |
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| T |
11909890 |
taatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacagagataagatcatcaatttcaactattggagagatttggagcttgagttc |
11909989 |
T |
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| Q |
612 |
aagcttatggatgcttctggaacaacattcatctcttcttcttttagtta |
661 |
Q |
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| T |
11909990 |
aagcttatggatgcttctcgaacaacattcatctcttctt-ttttagtta |
11910038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 414 - 661
Target Start/End: Complemental strand, 11918160 - 11917912
Alignment:
| Q |
414 |
gttgattaggattggtgtaaaatat--tttatacattgaatctaagtgatgtaacaaaagaggtcgtattattgggattaagcttcgttaaccaatcgtc |
511 |
Q |
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| T |
11918160 |
gttgattaggattggtgtaaaatatactttatacattgaatctaagtgatgtaacaaaagagatcatattgttgggattaagcttcgttaaccaatcatc |
11918061 |
T |
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| Q |
512 |
taatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacaaagataagatcatcaatttcaactattggagagatttggagcttgagttc |
611 |
Q |
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| T |
11918060 |
taatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacagagataagatcatcaatttcaactattggagagatttggagcttgagttc |
11917961 |
T |
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| Q |
612 |
aagcttatggatgcttctggaacaacattcatctcttcttcttttagtta |
661 |
Q |
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| T |
11917960 |
aagcttatggatgcttctcgaacaacattcatctcttctt-ttttagtta |
11917912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 142 - 346
Target Start/End: Original strand, 11909519 - 11909722
Alignment:
| Q |
142 |
tcagaattgagtatttaaaagtttacaaggaaattaattaaaaatgttctaaaagtttacgaatccggttgaatttttctggttgaagaattaaataaca |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
11909519 |
tcagaattgagtatttaaaagtttacaaggaaattaattaaaaatgttctaaaagtttacgaatccggttgaatttttctagttgaaaaattaaataaca |
11909618 |
T |
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| Q |
242 |
aattattcataaactaatgctcgattagaaaaaggttaaaagtcaaattataaacttttttaattttgagaacttagagaactaatgttgaattagtttg |
341 |
Q |
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| T |
11909619 |
aattattcataaactaatgctcgattagaaaaagattaaaagtcaaattataaacttttttaatttagagaacttaaagaactaatgttgaa-tagtttg |
11909717 |
T |
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| Q |
342 |
gtaga |
346 |
Q |
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| T |
11909718 |
gtaga |
11909722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 11909277 - 11909409
Alignment:
| Q |
17 |
gatgttccctgatgcatataaggtgttgttccagacttacatgctggctaaagaagctgaatattggcgagagaacactcgtcagaggttggaagctgta |
116 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11909277 |
gatgttccctgatgcatataaggtgttgttcgagacttacatgctggctaaagaagctgaatattggcgagagaacactcgtcagaggttggaagttgta |
11909376 |
T |
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| Q |
117 |
gatactgatatcacttgggaagtattcagaatt |
149 |
Q |
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| T |
11909377 |
ggtactgagatcacttgggaagtattcagaatt |
11909409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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