View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_80 (Length: 318)
Name: NF3002_low_80
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_80 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 40285067 - 40285373
Alignment:
| Q |
11 |
cagagatagtctggagtttcaatacagataacaagtggtccagtgtgtgcaaggtagcgcgttttgaagttgcccataggaacggtggtggtactgtcag |
110 |
Q |
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| T |
40285067 |
cagagatagtctggagtttcaatacagataacaagtggtccagtgtgtacaaggtagcgcgttttgaagttgcccataggaacggtggtggtactgtcag |
40285166 |
T |
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| Q |
111 |
gcttttcatgagtcttcgcttttttgctgggccagacggtggtagaatgaattcacatcgtcccagcatcttgctagtggtagaaggaggaagaagtgaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40285167 |
gcttttcatgagtcttcgcttttttgctgggccagacggtggtagaatgaattcacatcgtcccagcatcttgctagtggtagaaggaggaagaagcgaa |
40285266 |
T |
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| Q |
211 |
acatggtcttgttcttgttcttgatgagaatctttatggaataatttggggattagggcaagattatcagggtcagagtcaaaattaggaggatgaggaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40285267 |
acatggtcttgttcttgttcttgatgagaatctttatggaatgatttggggattagggcaagattatcaaggtcagagtcaaaattaggaggatgaggaa |
40285366 |
T |
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| Q |
311 |
gattggt |
317 |
Q |
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||||||| |
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| T |
40285367 |
gattggt |
40285373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 40280329 - 40280389
Alignment:
| Q |
252 |
taatttggggattagggcaagattatcagggtcagagtcaaaattaggaggatgaggaaga |
312 |
Q |
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||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
40280329 |
taatttgggaattagggcaagattattagggttagagtcaaaattaggaggacgaggaaga |
40280389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 40458021 - 40457961
Alignment:
| Q |
252 |
taatttggggattagggcaagattatcagggtcagagtcaaaattaggaggatgaggaaga |
312 |
Q |
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||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
40458021 |
taatttgggaattagggcaagattattagggttagagtcaaaattaggaggacgaggaaga |
40457961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 40280106 - 40280201
Alignment:
| Q |
11 |
cagagatagtctggagtttcaatacagataacaagtggtccagtgtgtgcaaggtagcgcgttttgaagttgcccataggaacggtggtggtactg |
106 |
Q |
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|||||||||| | |||||||| ||| ||||||| |||||| |||||||||||| | || ||||| ||||| |||||| |||| |||||||| |||| |
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| T |
40280106 |
cagagatagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcgaagtggcccatgggaatggtggtggaactg |
40280201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 40458244 - 40458149
Alignment:
| Q |
11 |
cagagatagtctggagtttcaatacagataacaagtggtccagtgtgtgcaaggtagcgcgttttgaagttgcccataggaacggtggtggtactg |
106 |
Q |
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|||||||||| | |||||||| ||| ||||||| |||||| |||||||||||| | || ||||| ||||| |||||| |||| |||||||| |||| |
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| T |
40458244 |
cagagatagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcgaagtggcccatgggaatggtggtggaactg |
40458149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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