View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_81 (Length: 317)
Name: NF3002_low_81
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 5111450 - 5111172
Alignment:
| Q |
20 |
ctaatatccaaaatcctcaactgatcaagttgaccaatagcatgtggaatagtttctttgatgaaatttgtactcaaatctaggtaccgtaacattgaca |
119 |
Q |
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| T |
5111450 |
ctaatatccaaaatcctcaacataccaagttgaccaatggcatgtggaatggttcctttgatgaaatttgtactcaaatctaggtaccgtaacattgaca |
5111351 |
T |
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| Q |
120 |
agtcggatatagattgaggaatagctccaacaaaattattgaagtaaagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctcc |
219 |
Q |
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| T |
5111350 |
agtcggatatagattgaggaatagctccaacaaaattattaaagtaaagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctcc |
5111251 |
T |
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| Q |
220 |
aacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaa |
298 |
Q |
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| T |
5111250 |
aacaaaatcattgtcactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatagaaa |
5111172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 5083621 - 5083899
Alignment:
| Q |
20 |
ctaatatccaaaatcctcaactgatcaagttgaccaatagcatgtggaatagtttctttgatgaaatttgtactcaaatctaggtaccgtaacattgaca |
119 |
Q |
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| T |
5083621 |
ctaatatccaaaatcctcaacataccaagttgactaatggcatgtggaatggttcctttgatgtgatttgatttcaaatttagatattctaacattgaca |
5083720 |
T |
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| Q |
120 |
agtcggatatagattgaggaatagctccaacaaaattattgaagtaaagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctcc |
219 |
Q |
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| T |
5083721 |
agttggatatagattgaggaataactccaacaatattgttttgccgaatatccaattgttgaagttttgataagtcccctatccttgaaggaatttctcc |
5083820 |
T |
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| Q |
220 |
aacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaa |
298 |
Q |
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| T |
5083821 |
aacaaaatcattgttgctcaaattcaacaatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaa |
5083899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 109 - 298
Target Start/End: Complemental strand, 5094358 - 5094169
Alignment:
| Q |
109 |
taacattgacaagtcggatatagattgaggaatagctccaacaaaattattgaagtaaagatccaaatgatgaagttttgctaagtcccctatccttgaa |
208 |
Q |
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| T |
5094358 |
taacattgacaagttgaatatagattgaggaataactccaacaatattattatagctaatatccaattgttgaagttttgataactcccctatccttgaa |
5094259 |
T |
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| Q |
209 |
ggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaa |
298 |
Q |
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| T |
5094258 |
ggaatttctccaacaaaatcattgttgcttaaattcaacaatttcaatcttttcaactgaagcaactcatgtggtaactcaccatggaaa |
5094169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 5094423 - 5094375
Alignment:
| Q |
34 |
cctcaactgatcaagttgaccaatagcatgtggaatagtttctttgatg |
82 |
Q |
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| T |
5094423 |
cctcaactgacgaagttgaccaattgcatgtggaatggttcctttgatg |
5094375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 14427589 - 14427681
Alignment:
| Q |
209 |
ggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctctt---caactgaagtaactcatgtggtaactcaccatggaaa |
298 |
Q |
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| T |
14427589 |
ggaatttctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaa |
14427681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 16873519 - 16873429
Alignment:
| Q |
208 |
aggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaa |
298 |
Q |
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| T |
16873519 |
aggaatttctccaacaaaatcattgtagctcaagtctaatctcttcagtctctgcagatgaagtaactcttgtggaaactcaccatggaaa |
16873429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 16873576 - 16873495
Alignment:
| Q |
75 |
ctttgatgaaatttgtactcaaatctaggtaccgtaacattgacaagtcggatatagattgaggaatagctccaacaaaattattg |
160 |
Q |
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| T |
16873576 |
ctttgatgagatttgatcttaaatctaggtactctaacattgacaagttgg----agattgaggaatttctccaacaaaatcattg |
16873495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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