View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_82 (Length: 313)
Name: NF3002_low_82
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 63 - 290
Target Start/End: Original strand, 41910989 - 41911212
Alignment:
| Q |
63 |
tgaaaggaaggaaattatggtgaaatatgcagctgaattcattagctttgttactgctgagaccaaaaccattattgcaatttagattataggacaacaa |
162 |
Q |
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| T |
41910989 |
tgaaagcaaggaaattatggtgaac----cagctgaattcattagctttgttactgctgagaccaaaaccattattgcaatttagattataggacaacaa |
41911084 |
T |
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| Q |
163 |
ttactgctgaagatttgttaattagtatgcaaaaattgggttttgatgtctatgctgcgtgttccctccgctacatccaacttttttgccatcgtgctcg |
262 |
Q |
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| T |
41911085 |
ttactgctgaagatttgttaattagtatgcaaaaattgggttttgatgtctatgctgcgtgttccctccgctacatccaacttttttgccatcgtgctcg |
41911184 |
T |
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| Q |
263 |
cgtaagtcaatacgctcccccacctcca |
290 |
Q |
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| T |
41911185 |
cgtaagtcaatacgctcccccacctcca |
41911212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 63 - 297
Target Start/End: Original strand, 41928727 - 41928959
Alignment:
| Q |
63 |
tgaaaggaaggaaattatggtgaaatatgcagctgaattcattagctttgttactgctgagaccaaaaccattattgcaatttagattataggacaacaa |
162 |
Q |
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| T |
41928727 |
tgaaagcaaggaaattatggtgaaatatgcagctgaatttattagctttgttaccgctgaggctaa--ccattattgcaagttagattgtagaacaacaa |
41928824 |
T |
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| Q |
163 |
ttactgctgaagatttgttaattagtatgcaaaaattgggttttgatgtctatgctgcgtgttccctccgctacatccaacttttttgccatcgtgctcg |
262 |
Q |
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| T |
41928825 |
ttactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcaatattccttccgctacatccaactttttcgtcatggtgctcg |
41928924 |
T |
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| Q |
263 |
cgtaagtcaatacgctcccccacctccatctccac |
297 |
Q |
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| T |
41928925 |
tgtaggtcaatatgctcccccacctccacctccac |
41928959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 145 - 297
Target Start/End: Original strand, 41938037 - 41938189
Alignment:
| Q |
145 |
tagattataggacaacaattactgctgaagatttgttaattagtatgcaaaaattgggttttgatgtctatgctgcgtgttccctccgctacatccaact |
244 |
Q |
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|||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||| || |||| |||||||||||||||| |
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| T |
41938037 |
tagattgtagaacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcggtattccttccgctacatccaact |
41938136 |
T |
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| Q |
245 |
tttttgccatcgtgctcgcgtaagtcaatacgctcccccacctccatctccac |
297 |
Q |
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| T |
41938137 |
ttttcgtcatggtgctcgtgtaggtcaatatgctcccccacctccacctccac |
41938189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41909580 - 41909535
Alignment:
| Q |
1 |
agcagtaaatagcaaaatcaattttcatagtaaaactaatagtttt |
46 |
Q |
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| T |
41909580 |
agcagtaaatagcaaaatcaattttcatagtaaaactaatagtttt |
41909535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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