View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_84 (Length: 311)
Name: NF3002_low_84
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 55208050 - 55208341
Alignment:
| Q |
1 |
cttggaaatctaaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55208050 |
cttggaaatctaaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgca-g |
55208148 |
T |
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| Q |
101 |
tggtttattgtttggtgtttaccgcgttccacacactcctc-ttaaagctcacactacactataaattaggaagaaaatcatatttccatttcag-tact |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
55208149 |
tggtttattgtttggtgtttaccgcgttccacacactcctctttaaagctcacactacactataaattaggaacaaaatcatatttccatttcagttact |
55208248 |
T |
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| Q |
199 |
cctatttttcttcattcaaaatcatgttctttcaagtcattgccagccacaaacaaacaaaactctctgattcttgctcatgacccgccgtta |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55208249 |
cctatttttcttcattcaaaatcatgttctttcaagtcattgccagccacaaacaaacaaaactctctgattcttgctcatgacccgccgtta |
55208341 |
T |
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