View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_87 (Length: 290)

Name: NF3002_low_87
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_87
NF3002_low_87
[»] chr5 (3 HSPs)
chr5 (20-290)||(29299599-29299869)
chr5 (175-285)||(16648481-16648591)
chr5 (193-272)||(27403086-27403165)
[»] chr2 (3 HSPs)
chr2 (55-284)||(44690954-44691183)
chr2 (67-285)||(44515450-44515669)
chr2 (177-284)||(38968840-38968947)
[»] chr4 (4 HSPs)
chr4 (178-276)||(31737315-31737413)
chr4 (177-251)||(29080981-29081055)
chr4 (232-284)||(47551279-47551331)
chr4 (225-284)||(8506535-8506594)
[»] chr6 (6 HSPs)
chr6 (172-285)||(11335770-11335883)
chr6 (222-290)||(21145469-21145537)
chr6 (200-285)||(24568406-24568491)
chr6 (225-285)||(8247203-8247262)
chr6 (238-285)||(9288922-9288969)
chr6 (238-285)||(9295866-9295913)
[»] chr7 (2 HSPs)
chr7 (217-284)||(6229983-6230050)
chr7 (184-284)||(12829292-12829396)
[»] chr8 (5 HSPs)
chr8 (193-283)||(25659788-25659878)
chr8 (162-260)||(13309737-13309835)
chr8 (223-284)||(4901693-4901754)
chr8 (175-284)||(44682272-44682381)
chr8 (217-285)||(29577078-29577146)
[»] chr3 (1 HSPs)
chr3 (217-285)||(48721328-48721396)
[»] chr1 (3 HSPs)
chr1 (193-285)||(24616226-24616318)
chr1 (194-271)||(9875572-9875649)
chr1 (223-284)||(40197970-40198031)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 29299869 - 29299599
Alignment:
Q  20 ccaattgtctacctttaatgaatgtcgattgggaagaagagataattgaattcattacaccggctaatctttttgccaacaccttagagagtaacttgta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29299869 ccaattgtctacctttaatgaatgtcgattgggaagaagagataattgaattcattacaccggctaatctttttgccaacaccttagagagtaacttgta 29299770  T
Q  120 aatactaccaagtagagaaattggacgaaagtccttcaacatcatcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttggc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29299769 aatactaccaagtagagaaattggacgaaagtccttcaacatcatcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttggc 29299670  T
Q  220 accacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaacctttt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29299669 accacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaagtaccaaaacctttt 29299599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 16648591 - 16648481
Alignment:
Q  175 acctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcatta 274  Q
    ||||| |||||||||||||| ||| |||| || | || |||||||| |||  | || ||||| ||||||||||||||||||||||| |||| ||| || |    
T  16648591 accttagggatcaaagcgaccaaaaaagccaacatacctcttggcaacactccgttggcatggaattgatcaaacataatcctcacttcattctttatca 16648492  T
Q  275 aataccaaaac 285  Q
    |||||||||||    
T  16648491 aataccaaaac 16648481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 27403165 - 27403086
Alignment:
Q  193 acaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcat 272  Q
    ||||||||||| ||||||||  |||||| |||||||||  |||| ||||||| ||| | |||| ||||||||| ||||||    
T  27403165 acaaaataagccaataaactctttggcaacacctcattgccatgaaattgataaaagaaaatcatcacctcattcttcat 27403086  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 284
Target Start/End: Complemental strand, 44691183 - 44690954
Alignment:
Q  55 gaagagataattgaattcattacaccggctaatctttttgccaacaccttagagagtaacttgtaaatactaccaagtagagaaattggacgaaagtcct 154  Q
    ||||| ||||| || ||||| |||||||| || || |||||||| |||||||| || || || |||| |||||| || |  |||||||||||  | ||||    
T  44691183 gaagaaataatcgagttcataacaccggccaacctctttgccaataccttagataggaatttataaagactaccgagcaaggaaattggacggtaatcct 44691084  T
Q  155 tcaacatcatcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataat 254  Q
    | |||  ||| || ||||| |||||||  |||||||| || ||||| || || | || ||| || ||||||||||||||||  |||||||| ||||| ||    
T  44691083 ttaaccccattggcgaggaaacctttgaaatcaaagcaacgaaatacgccaaaagacctctaggaaccacctcattagcatagaattgatcgaacattat 44690984  T
Q  255 cctcacctcatccttcattaaataccaaaa 284  Q
    ||| ||||||||||| || |||||||||||    
T  44690983 cctaacctcatccttgatcaaataccaaaa 44690954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 285
Target Start/End: Original strand, 44515450 - 44515669
Alignment:
Q  67 gaattcattacaccggctaatctttttgccaacaccttagagagtaacttgtaaatactaccaagtagagaaattggacgaaagtccttcaacatcatcg 166  Q
    |||||||| |||||| | |||||||| |||||||||||||| || | ||||||||  |||| ||| |  || || ||||| || ||||| | || |||||    
T  44515450 gaattcatcacaccgaccaatcttttagccaacaccttagaaagaagcttgtaaaggctactaagcaacgagataggacggaaatccttaagcaccatcg 44515549  T
Q  167 gtgaggacacctttgggatcaaagcgacaaaataag-ctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcat 265  Q
    | ||||| ||||| ||||| || || ||||| |||| | || |||| | | || | ||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  44515550 gagaggagaccttagggattaaggccacaaagtaagacaaaaaaacctttaggaatcaccttattagaatggaattggtcaaacataatcctcacctcat 44515649  T
Q  266 ccttcattaaataccaaaac 285  Q
    |||| |  ||||||||||||    
T  44515650 cctttaacaaataccaaaac 44515669  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 38968947 - 38968840
Alignment:
Q  177 ctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaa 276  Q
    ||||||||| ||||  |||||||| |  || ||||| || ||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||| |||| |    
T  38968947 ctttgggattaaagtaacaaaataggacaaaaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattaga 38968848  T
Q  277 taccaaaa 284  Q
    ||| ||||    
T  38968847 tacaaaaa 38968840  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 276
Target Start/End: Original strand, 31737315 - 31737413
Alignment:
Q  178 tttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaa 276  Q
    ||||| |||||||| |||||||||||||| |  | | |||| |  |||||||||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  31737315 tttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaaatcctcacctcatccttgattaaa 31737413  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 29081055 - 29080981
Alignment:
Q  177 ctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacat 251  Q
    ||||||||| ||||| |||||||| || || |||||| |||| ||||||||||||||||| |||||||| |||||    
T  29081055 ctttgggattaaagccacaaaatatgccaacaaactttttggtaccacctcattagcatgaaattgatcgaacat 29080981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 47551279 - 47551331
Alignment:
Q  232 gcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaa 284  Q
    ||||| |||||||| |||||||| ||||||||||||||||| |||||||||||    
T  47551279 gcatggaattgatcgaacataattctcacctcatccttcatcaaataccaaaa 47551331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 8506535 - 8506594
Alignment:
Q  225 ctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaa 284  Q
    |||||||||||| ||||| || |||||||| |||||||||||||| || || ||||||||    
T  8506535 ctcattagcatggaattggtcgaacataattctcacctcatccttgatcaagtaccaaaa 8506594  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 11335770 - 11335883
Alignment:
Q  172 gacacctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttca 271  Q
    |||||||| || || ||||  ||||| ||||| ||||||||| ||||||||||||| || ||||| ||||||||||||| ||||| || ||| | |||||    
T  11335770 gacaccttcggaattaaagtcacaaagtaagccaataaactttttggcaccacctcgtttgcatgaaattgatcaaacaaaatccgcatctcgttcttca 11335869  T
Q  272 ttaaataccaaaac 285  Q
      ||||||||||||    
T  11335870 acaaataccaaaac 11335883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 21145537 - 21145469
Alignment:
Q  222 cacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaacctttt 290  Q
    ||||||||||| ||| |||||||||||||| ||||| | |||||||||||| | |||||||||||||||    
T  21145537 cacctcattaggatggaattgatcaaacattatcctaatctcatccttcataagataccaaaacctttt 21145469  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 24568491 - 24568406
Alignment:
Q  200 aagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaac 285  Q
    |||| ||||||| |||||| || ||||||||| | |  ||||||||||||| ||| | ||||||||| ||||| ||||||||||||    
T  24568491 aagccaataaacatcttggaactacctcattaccctaaaattgatcaaacaaaatgcgcacctcatctttcatcaaataccaaaac 24568406  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 8247203 - 8247262
Alignment:
Q  225 ctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaac 285  Q
    |||||||||||| |||||||| |||| |||| ||||||||||||| | |||||||||||||    
T  8247203 ctcattagcatgaaattgatcgaacaaaatcatcacctcatcctt-aataaataccaaaac 8247262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 9288969 - 9288922
Alignment:
Q  238 aattgatcaaacataatcctcacctcatccttcattaaataccaaaac 285  Q
    |||||||||||||||||||||| | |||||||||| | ||||||||||    
T  9288969 aattgatcaaacataatcctcatcccatccttcataagataccaaaac 9288922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 9295913 - 9295866
Alignment:
Q  238 aattgatcaaacataatcctcacctcatccttcattaaataccaaaac 285  Q
    ||||||||||||| |||||||||| |||||||||| | ||||||||||    
T  9295913 aattgatcaaacacaatcctcaccccatccttcataagataccaaaac 9295866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 6230050 - 6229983
Alignment:
Q  217 ggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaa 284  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||| |||| |||||||||    
T  6230050 ggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttaattagataccaaaa 6229983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 12829292 - 12829396
Alignment:
Q  184 atcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacata----atcctcacctcatccttcattaaatac 279  Q
    |||||||| |||||||| ||||| |||| | |||| |   |||||||  |||| |||||||||||||||    |||| |||||||||||| |||||||||    
T  12829292 atcaaagcaacaaaatacgctaacaaaccttttgggatttcctcattcccatgaaattgatcaaacatatataatccgcacctcatccttgattaaatac 12829391  T
Q  280 caaaa 284  Q
    |||||    
T  12829392 caaaa 12829396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 25659878 - 25659788
Alignment:
Q  193 acaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaa 283  Q
    ||||||||||| || | || ||| |||| ||||||||||||||| ||||| ||||||| ||| ||||| ||||| || |||||||||||||    
T  25659878 acaaaataagccaacatacctctcggcaacacctcattagcatgaaattggtcaaacaaaattctcacttcatctttaattaaataccaaa 25659788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 13309835 - 13309737
Alignment:
Q  162 catcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttg-gcaccacctcattagcatgtaattgatcaaacataatcctcac 260  Q
    |||| ||||||| ||||||||||| |  | |||||||||||||||||| || |||| | | ||||||||||||||| ||||| |||||||||||| ||||    
T  13309835 catcagtgaggatacctttgggataagcgtgacaaaataagctaataagct-cttgagaatcacctcattagcatggaattggtcaaacataatcttcac 13309737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 4901754 - 4901693
Alignment:
Q  223 acctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaa 284  Q
    ||||||||||| || ||||||||||||||||| || || |||||||| || |||||||||||    
T  4901754 acctcattagcgtgaaattgatcaaacataattctaacttcatcctttatcaaataccaaaa 4901693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 44682381 - 44682272
Alignment:
Q  175 acctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcatta 274  Q
    |||||||| || ||||  |||||||| |  || ||||| || |||||||||||||| ||||| |||||||||||||| || ||||| |||| ||| || |    
T  44682381 acctttggaattaaagtaacaaaataggacaagaaactcctcggcaccacctcatttgcatgaaattgatcaaacatgattctcacatcatgcttgataa 44682282  T
Q  275 aataccaaaa 284  Q
     |||||||||    
T  44682281 gataccaaaa 44682272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 29577078 - 29577146
Alignment:
Q  217 ggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaac 285  Q
    ||||| |||||||||||||| ||||||| ||||||||| || | ||||| |||||  || |||||||||    
T  29577078 ggcacaacctcattagcatggaattgatgaaacataattctaatctcattcttcaacaagtaccaaaac 29577146  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 48721396 - 48721328
Alignment:
Q  217 ggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaac 285  Q
    |||||||||||||||||||| ||||||||||||||||| || |  |||| ||||| ||| |||||||||    
T  48721396 ggcaccacctcattagcatgaaattgatcaaacataattctaatttcattcttcaataagtaccaaaac 48721328  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 24616226 - 24616318
Alignment:
Q  193 acaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaac 285  Q
    ||||||||||| || | || | | |||| ||||||||||||||| ||||| ||||||||| | |||||||||| ||| || || |||||||||    
T  24616226 acaaaataagccaacatacatttaggcaacacctcattagcatggaattggtcaaacatagttctcacctcattcttgatcaagtaccaaaac 24616318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 9875572 - 9875649
Alignment:
Q  194 caaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttca 271  Q
    |||||||||| ||||||||  |||| | |||||||||| ||||  |||||||||| |  ||||||||||||| |||||    
T  9875572 caaaataagccaataaactctttgggaacacctcattaccatgatattgatcaaaaaatatcctcacctcattcttca 9875649  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 40197970 - 40198031
Alignment:
Q  223 acctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaa 284  Q
    ||||||||| |||| ||||| ||||||||||| ||||||||||| || || || ||||||||    
T  40197970 acctcattaccatgaaattggtcaaacataattctcacctcatctttgatcaagtaccaaaa 40198031  T

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