View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_88 (Length: 286)
Name: NF3002_low_88
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 8009209 - 8008955
Alignment:
| Q |
18 |
aaaatgatatataggttcataactatctagtctagttataatgacaatgtggcgaaaatggaagtttgtgcaagaaaacgacaacgtttagaaggtaata |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8009209 |
aaaaggatatataggttcataactatctagtctagttataatgacaatgtggcgaaaatggaagtttgtgcaagaaaacgacaacgtttagaaggtaata |
8009110 |
T |
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| Q |
118 |
taaaagggaaatgtgtttgacatggagagcataaaccgtaaccgaaagtttagttctaaattacacgtcctcctcacacttccttagacatgcaaaatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8009109 |
taaaagggaaatgtgtttgacatggagagcataaaccgtaaccgaaagtttagttctaaattacacgtcctcctcacacttccttagacatgcaaaatat |
8009010 |
T |
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| Q |
218 |
taacgactttctctcaaactcttttttcttccctcaaatcttccaacgtttttct |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8009009 |
taacgactttctctcaaactcttttttcttccctcaaatcttccaacgtttttct |
8008955 |
T |
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