View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3003_high_4 (Length: 388)
Name: NF3003_high_4
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 17443112 - 17442752
Alignment:
| Q |
12 |
atgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443112 |
atgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
17443013 |
T |
|
| Q |
112 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443012 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
17442913 |
T |
|
| Q |
212 |
agaagaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442912 |
agaggaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
17442813 |
T |
|
| Q |
312 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaa |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442812 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaa |
17442752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 3059088 - 3059448
Alignment:
| Q |
12 |
atgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
111 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059088 |
atgaaagttgtgaatcaaattagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
3059187 |
T |
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| Q |
112 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
211 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059188 |
agatttttgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
3059287 |
T |
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| Q |
212 |
agaagaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059288 |
agaggaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
3059387 |
T |
|
| Q |
312 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaa |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059388 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaa |
3059448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 4873731 - 4874091
Alignment:
| Q |
12 |
atgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
111 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873731 |
atgaaagttgtgaatcaaataagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
4873830 |
T |
|
| Q |
112 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4873831 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagaattttgagaca |
4873930 |
T |
|
| Q |
212 |
agaagaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873931 |
agaggaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
4874030 |
T |
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| Q |
312 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaa |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4874031 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaa |
4874091 |
T |
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