View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3003_high_9 (Length: 290)
Name: NF3003_high_9
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 31173171 - 31173412
Alignment:
| Q |
47 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatttcaattcattcttttt |
146 |
Q |
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| T |
31173171 |
tagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcgatttcaattcattcttttt |
31173270 |
T |
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| Q |
147 |
---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
231 |
Q |
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| T |
31173271 |
ctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
31173370 |
T |
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| Q |
232 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaa |
273 |
Q |
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| T |
31173371 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaa |
31173412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 31227283 - 31227042
Alignment:
| Q |
47 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatttcaattcattcttttt |
146 |
Q |
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| T |
31227283 |
tagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcgatttcaattcattcttttt |
31227184 |
T |
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| Q |
147 |
---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
231 |
Q |
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| T |
31227183 |
ctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
31227084 |
T |
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| Q |
232 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaa |
273 |
Q |
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| T |
31227083 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaa |
31227042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 31232371 - 31232288
Alignment:
| Q |
190 |
cagatgattaaggatgcaattgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaa |
273 |
Q |
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| T |
31232371 |
cagatgattaaggatgcaattgtgactttgaaagagagaactggttcaagtcaatttgcaattgcgaaattcattgaagagaaa |
31232288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 262
Target Start/End: Original strand, 32797854 - 32798095
Alignment:
| Q |
47 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatt-tcaattca-----tt |
140 |
Q |
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|||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| || |
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| T |
32797854 |
tagcgaaggaatccaaacctaagaaagcttccaaaccacgaaaccctgcttctcatcctacttacgaagaggttcgtttcaattctcaattcactccttt |
32797953 |
T |
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| Q |
141 |
ct---------ttttgttacaaattatagtttcaattggatcta-----------atttgaacgaattgcagatgattaaggatgcaattgtgtcgctga |
220 |
Q |
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| T |
32797954 |
ctaattcttagttttgttacgaattatagtttcaattggatctaattttttattgatttgaacaatttgcagatgattaaggatgcaattgtatctctga |
32798053 |
T |
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| Q |
221 |
aggagaggactggttcaagccaatacgcaattgcgaaattca |
262 |
Q |
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| T |
32798054 |
aggataggacgggttcaagccaatatgcgattgcaaaattca |
32798095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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