View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3003_low_1 (Length: 562)

Name: NF3003_low_1
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3003_low_1
NF3003_low_1
[»] chr8 (1 HSPs)
chr8 (3-546)||(43868432-43868976)
[»] chr6 (1 HSPs)
chr6 (229-285)||(21188355-21188411)
[»] chr1 (1 HSPs)
chr1 (476-525)||(42258914-42258963)
[»] scaffold0055 (7 HSPs)
scaffold0055 (489-531)||(17964-18006)
scaffold0055 (489-531)||(20680-20722)
scaffold0055 (489-531)||(23919-23961)
scaffold0055 (489-531)||(29276-29318)
scaffold0055 (489-531)||(37152-37194)
scaffold0055 (489-531)||(45001-45043)
scaffold0055 (489-531)||(57726-57768)
[»] scaffold0052 (7 HSPs)
scaffold0052 (489-531)||(8908-8950)
scaffold0052 (489-531)||(12110-12152)
scaffold0052 (489-531)||(16569-16611)
scaffold0052 (489-531)||(20923-20965)
scaffold0052 (489-531)||(39863-39905)
scaffold0052 (489-531)||(55330-55372)
scaffold0052 (489-531)||(66747-66789)
[»] chr4 (1 HSPs)
chr4 (501-531)||(25744466-25744496)
[»] scaffold0515 (1 HSPs)
scaffold0515 (491-531)||(10117-10157)
[»] scaffold0152 (2 HSPs)
scaffold0152 (491-531)||(27737-27777)
scaffold0152 (491-531)||(36513-36553)


Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 3 - 546
Target Start/End: Original strand, 43868432 - 43868976
Alignment:
Q  3 aatgaaatggaagcatccaagaatgaaatgtgaaaggctaaggatgaagaacttgatgagttggaatcagtttttgacatgacaagtgatgaggtgtttc 102  Q
    ||||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||    
T  43868432 aatgaaatggatgcatccaaaagtgaaatgttaaaggttaaggatgaagaacttgatgatttggaatcagtttttgacatgacaagtgatgatgtttttc 43868531  T
Q  103 attggaatagtgataataatgatgtatcactagcacaacaagagaaagagtatatgcctttgagtaatagtagtgttggttatagtgagagtgttattac 202  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43868532 attggaatattgataataatgatgtatcactagcacaacaagagaaagagtatatgcctttgagtaatagtagtgttggttatagtgagagcgttattac 43868631  T
Q  203 taaagaagaaacaaagagagagagatttttgagactaaactatgaagaggttattactgaatggagcaggcaaggttctccttctccatggactactgca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868632 taaagaagaaacaaagagagagagatttttgagactaaactatgaagaggttattactgaatggagcaggcaaggttctccttctccatggactactgca 43868731  T
Q  303 aaccctcctaagttcaattgtgatgatgattcatggcaaaacttattggtacttcaacttttca-nnnnnnnnncaatcatctcttttacactatactaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  43868732 aaccctcctaagttcaattgtgatgatgattcatggcaaaacttattggtacttcaacttttcattttttttctcaatcatctcttttacactatactaa 43868831  T
Q  402 agaagacattaaattagcaacaaaaatttagcgataacataatttagatattttattttttccatatgtaattgaaacgactaggtttgaatctcagtag 501  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43868832 acaagacattaaattagcaacaaaaatttagtgataacataatttagatattttattttttccatatgtaattgaaacgactagggttgaatctcagtag 43868931  T
Q  502 atcgtggcagcaaggtcactctaccacttagttgtaatttaatac 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43868932 atcgtggcagcaaggtcactctaccacttagttgtaatttaatac 43868976  T

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Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 21188411 - 21188355
Alignment:
Q  229 ttttgagactaaactatgaagaggttattactgaatggagcaggcaaggttctcctt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21188411 ttttgagactaaactatgaagaggttattactgaatggagcaggcaaggttctcctt 21188355  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 42258963 - 42258914
Alignment:
Q  476 aaacgactaggtttgaatctcagtagatcgtggcagcaaggtcactctac 525  Q
    ||||||| ||| |||||||||||| |||||||||||||||| ||||||||    
T  42258963 aaacgacaagggttgaatctcagtggatcgtggcagcaaggccactctac 42258914  T

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Target: scaffold0055 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Complemental strand, 18006 - 17964
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  18006 tgaatctcagtggatcgtggcagcaaggccactctgccactta 17964  T

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Target: scaffold0055; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 20680 - 20722
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  20680 tgaatctcagtggatcgtggcagcaaggccactctgccactta 20722  T

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Target: scaffold0055; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 23919 - 23961
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  23919 tgaatctcagtggatcgtggcagcaaggccactctgccactta 23961  T

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Target: scaffold0055; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Complemental strand, 29318 - 29276
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  29318 tgaatctcagtggatcgtggcagcaaggccactctgccactta 29276  T

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Target: scaffold0055; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 37152 - 37194
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  37152 tgaatctcagtggatcgtggcagcaaggccactctgccactta 37194  T

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Target: scaffold0055; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 45001 - 45043
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  45001 tgaatctcagtggatcgtggcagcaaggccactctgccactta 45043  T

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Target: scaffold0055; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 57726 - 57768
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  57726 tgaatctcagtggatcgtggcagcaaggccactctgccactta 57768  T

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Target: scaffold0052 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 8908 - 8950
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  8908 tgaatctcagtggatcgtggcagcaaggccactctgccactta 8950  T

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Target: scaffold0052; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 12110 - 12152
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  12110 tgaatctcagtggatcgtggcagcaaggccactctgccactta 12152  T

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Target: scaffold0052; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Complemental strand, 16611 - 16569
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  16611 tgaatctcagtggatcgtggcagcaaggccactctgccactta 16569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 20923 - 20965
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  20923 tgaatctcagtggatcgtggcagcaaggccactctgccactta 20965  T

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Target: scaffold0052; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Complemental strand, 39905 - 39863
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  39905 tgaatctcagtggatcgtggcagcaaggccactctgccactta 39863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 55330 - 55372
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  55330 tgaatctcagtggatcgtggcagcaaggccactctgccactta 55372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 66747 - 66789
Alignment:
Q  489 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  66747 tgaatctcagtggatcgtggcagcaaggccactctgccactta 66789  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 531
Target Start/End: Complemental strand, 25744496 - 25744466
Alignment:
Q  501 gatcgtggcagcaaggtcactctaccactta 531  Q
    |||||||||||||||||||||||||||||||    
T  25744496 gatcgtggcagcaaggtcactctaccactta 25744466  T

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Target: scaffold0515 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 10157 - 10117
Alignment:
Q  491 aatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  10157 aatctcagtggatcgtggcagcaaggccactctgccactta 10117  T

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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 27777 - 27737
Alignment:
Q  491 aatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  27777 aatctcagtggatcgtggcagcaaggccactctgccactta 27737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 36553 - 36513
Alignment:
Q  491 aatctcagtagatcgtggcagcaaggtcactctaccactta 531  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  36553 aatctcagtggatcgtggcagcaaggccactctgccactta 36513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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