View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3003_low_12 (Length: 263)

Name: NF3003_low_12
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3003_low_12
NF3003_low_12
[»] chr2 (9 HSPs)
chr2 (1-251)||(8065888-8066138)
chr2 (1-251)||(35488065-35488315)
chr2 (3-251)||(16213413-16213661)
chr2 (3-251)||(28400214-28400462)
chr2 (164-215)||(11234304-11234355)
chr2 (167-236)||(10597959-10598028)
chr2 (168-252)||(36804354-36804438)
chr2 (167-236)||(9668834-9668903)
chr2 (168-252)||(36804139-36804223)
[»] chr6 (6 HSPs)
chr6 (1-251)||(23065708-23065959)
chr6 (3-251)||(9565595-9565843)
chr6 (3-251)||(21549076-21549324)
chr6 (94-251)||(24379005-24379162)
chr6 (102-215)||(33805045-33805157)
chr6 (164-236)||(13085782-13085854)
[»] chr1 (6 HSPs)
chr1 (1-252)||(34853303-34853554)
chr1 (116-215)||(16873269-16873368)
chr1 (167-236)||(49264792-49264861)
chr1 (174-236)||(13867650-13867712)
chr1 (174-236)||(45795467-45795529)
chr1 (171-236)||(20795911-20795976)
[»] chr7 (9 HSPs)
chr7 (5-251)||(18671398-18671644)
chr7 (3-251)||(18767636-18767884)
chr7 (3-251)||(34457822-34458070)
chr7 (123-251)||(8771662-8771790)
chr7 (102-215)||(17856000-17856113)
chr7 (164-215)||(31025328-31025379)
chr7 (57-216)||(41339788-41339947)
chr7 (168-237)||(19728729-19728798)
chr7 (171-252)||(36227982-36228063)
[»] chr3 (8 HSPs)
chr3 (3-251)||(36709138-36709386)
chr3 (4-251)||(18368620-18368867)
chr3 (5-251)||(15481423-15481669)
chr3 (3-251)||(42675102-42675350)
chr3 (3-251)||(45684404-45684652)
chr3 (168-238)||(14867614-14867684)
chr3 (174-236)||(40513541-40513603)
chr3 (167-237)||(10867964-10868034)
[»] scaffold0006 (1 HSPs)
scaffold0006 (3-239)||(42378-42614)
[»] chr5 (7 HSPs)
chr5 (3-251)||(38357695-38357943)
chr5 (84-209)||(6866657-6866782)
chr5 (142-251)||(11818018-11818127)
chr5 (168-238)||(19513294-19513364)
chr5 (205-251)||(29094373-29094419)
chr5 (3-59)||(6866784-6866840)
chr5 (102-215)||(35122469-35122582)
[»] chr8 (4 HSPs)
chr8 (3-251)||(44082676-44082924)
chr8 (168-238)||(11394177-11394247)
chr8 (177-238)||(12134569-12134630)
chr8 (167-236)||(43253553-43253622)
[»] chr4 (5 HSPs)
chr4 (3-251)||(26694156-26694404)
chr4 (19-252)||(53810068-53810301)
chr4 (105-252)||(4640445-4640592)
chr4 (174-236)||(43516565-43516627)
chr4 (168-238)||(42953323-42953393)
[»] scaffold0112 (1 HSPs)
scaffold0112 (9-252)||(15320-15563)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 8065888 - 8066138
Alignment:
Q  1 ttggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttcccca 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||     
T  8065888 ttggtgatagtgttaggcggagggtgggtgatggtgcagcaactttgttctagtcgcataggtggattggcggttccctgctcagtgtggggtttccccg 8065987  T
Q  101 cttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttg 200  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8065988 cttgtttgacttatctgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttggcggcgtaggttg 8066087  T
Q  201 taggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8066088 tgggcgtgggaggaggctatgctagaggagtgtagggcgctactatttgat 8066138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 35488315 - 35488065
Alignment:
Q  1 ttggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttcccca 100  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||     
T  35488315 ttggtgatagtgttaggcggagggtgggtgatggtgcagcgactctgttctggtcgcataggtggattggcggttccccgctcagtgtgcggtttccccg 35488216  T
Q  101 cttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttg 200  Q
    ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35488215 cttgtttgacttgtctgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttggcggcgtaggttg 35488116  T
Q  201 taggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    | |||||||||||||||| ||||||||||||||| ||| ||||| ||||||    
T  35488115 tgggcgtgggaggaggctttgctagaggagtgtatggctctactatttgat 35488065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 16213661 - 16213413
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| |||||||||||||||||| | || ||  |||||| |||||||||||||||||| ||||| |||||  |||||  |||||||  ||    
T  16213661 ggtgatagtgttagacggagggtgggtgatggtactgcgacgttgttctggtcgcataggtggattggaggttctccgctttgtgtgtggtttccctgct 16213562  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||||||||||||||| |||||  ||||||||||| |||||  |||||||| || |||||| ||||||||  |||||||| | |     
T  16213561 tgtttgacttaacagagaacaaaaccattacggtggcctctttgttctctttgggtacggagcaggatgtggagggatggagttggaggcgtaggctttg 16213462  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||||||||||  | | |||||||||||||||||| |||| ||||||    
T  16213461 ggcgtgggaggagattttactagaggagtgtagggcgttactatttgat 16213413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 28400214 - 28400462
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| ||||||||||| |||||| |  | |   |||||| |||||||||||||||||| ||| | || ||  | |||| |||||||| ||    
T  28400214 ggtgatagtgttagacggagggtgggagatggtacgtcgaagttgttctggtcgcataggtggattggaggtactcctctttgcgtgcggtttccccgct 28400313  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||| ||||||||||| |||||  |||||||||||  ||||  |||||||| ||||||||||||||||||  |||||||  |||     
T  28400314 tgtttgacttagcagagaataaaaccattacggtggcatctttgttctcttcgggtacggagcaggatggggaggggtggagttggaggcgtagactgtg 28400413  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    ||| |||||||||  | | |||||||||||||||||| |||| ||||||    
T  28400414 ggcttgggaggagcttttactagaggagtgtagggcgttactatttgat 28400462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 11234304 - 11234355
Alignment:
Q  164 gcagggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggag 215  Q
    ||||||||||||||||||||||||  |||| ||||||| |||||||||||||    
T  11234304 gcagggtggggaggggtggagttggaggcggaggttgtgggcgtgggaggag 11234355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 10598028 - 10597959
Alignment:
Q  167 gggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||||||||||||||||||||  |||| ||||||| |||||||||||||  | |  ||||||||||||||    
T  10598028 gggtggggaggggtggagttggaggcggaggttgtgggcgtgggaggagattgtcttagaggagtgtagg 10597959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 36804438 - 36804354
Alignment:
Q  168 ggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgatg 252  Q
    |||||||| || ||||| || || || ||||||||||||||||||||||   || ||||||||||||||||  |||| |||||||    
T  36804438 ggtggggatggttggagatggcgtcgaaggttgtaggcgtgggaggaggacttgttagaggagtgtagggctttactatttgatg 36804354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 9668834 - 9668903
Alignment:
Q  167 gggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||||||||||||||||||||  |||| ||| ||| |||||||||||||  | |  ||||||||||||||    
T  9668834 gggtggggaggggtggagttggaggcggaggctgtgggcgtgggaggagattgtcttagaggagtgtagg 9668903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 36804223 - 36804139
Alignment:
Q  168 ggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgatg 252  Q
    |||||||| || ||||| || || || ||||||| ||||||||||||||   || ||||||||||||||||  |||| |||||||    
T  36804223 ggtggggatggttggagatggcgtcgaaggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttactatttgatg 36804139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 23065708 - 23065959
Alignment:
Q  1 ttggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttcccca 100  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||  ||||| |     
T  23065708 ttggtgatagtgttaggcggagggtgggtgatggtgcagcgactctgttctggtcgcataggtggattggtggttctccgctcagtgtgcgatttcctcg 23065807  T
Q  101 cttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtgggga-ggggtggagttgacggcgtaggtt 199  Q
     |||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||    
T  23065808 tttgtttgacttgtttgagaacaaaaccattatagtggctactttgttctctttgggtctggagcagggtggggagggggtggagttggcggcgtcggtt 23065907  T
Q  200 gtaggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    || |||||||||||||| | ||||||||||||||| ||| ||||| ||||||    
T  23065908 gtgggcgtgggaggaggatttgctagaggagtgtaaggctctactatttgat 23065959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 9565843 - 9565595
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| |||||||||||||||||||  || ||| |||| | |||||||||||||||||| |||||||||||  ||||||  ||| | |  |    
T  9565843 ggtgatagtgttagacggagggtgggtgatggtgtcgcgactttgttttggtcgcataggtggattggtggttccccgctttgtgtgcgattttctcggt 9565744  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    | ||||| |||  ||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||     
T  9565743 tatttgacttagctgagaacaaaatcattacggtggcttctttgttctctttgggtctggagcagggtggggaggggtggagttggaggcgtaggttgtg 9565644  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||||||||||||| ||||||||||||||| | || |||||||||||    
T  9565643 ggcgtgggaggaggctttgctagaggagtgtaagacgttactttttgat 9565595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 21549324 - 21549076
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    ||||||||||||||  ||||||||||||||||| | || ||| |||||| ||||||||||| | |||| ||||| ||| |  |||||| |||||||| ||    
T  21549324 ggtgatagtgttagatggagggtgggtgatggttctgcgactttgttctggtcgcataggtagcttggaggttctccgttttgtgtgcggtttccccgct 21549225  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   |||||||||||||||||||| ||  ||||||||||| ||||| |||||||||  |||||||||||||||||  |||||||  | |     
T  21549224 tgtttgacttagcagagaacaaaaccattacagtagcctctttgttctctttgggtatggagcaggagggggaggggtggagttggaggcgtagactttg 21549125  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||||||||||  | | |||||||||||||| ||| |||| ||||||    
T  21549124 ggcgtgggaggagcttttactagaggagtgtagagcgttactatttgat 21549076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 251
Target Start/End: Complemental strand, 24379162 - 24379005
Alignment:
Q  94 ttccccacttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcg 193  Q
    |||||| ||||||||| |||   || |||||||||||||| || ||  ||||||||||| |||||  ||||||||  |||||||||||||| ||  ||||    
T  24379162 ttccccgcttgtttgacttagcagaaaacaaaaccattacggtagcctctttgttctctttgggtacggagcaggagggggaggggtggagatggaggcg 24379063  T
Q  194 taggttgtaggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||  | | |||||||||||||  | |  ||||||||||||||||| |||| ||||||    
T  24379062 tagactatgggcgtgggaggagcttttattagaggagtgtagggcgttactatttgat 24379005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 33805157 - 33805045
Alignment:
Q  102 ttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgt 201  Q
    |||||||| |||  ||||||||||||||||   ||||| | | |||||||| | || || |||||||| ||||| |||||||||||| | ||||||||||    
T  33805157 ttgtttgacttagctgagaacaaaaccattttggtggcgaatatgttctctcttggactagagcagggaggggaagggtggagttga-gacgtaggttgt 33805059  T
Q  202 aggcgtgggaggag 215  Q
     ||| |||||||||    
T  33805058 gggcttgggaggag 33805045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 13085854 - 13085782
Alignment:
Q  164 gcagggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||||||  |||||||||||||||  |||| ||||||| |||||||||||||  | | |||||||||||||||    
T  13085854 gcagggtatggaggggtggagttggaggcggaggttgtgggcgtgggaggagattgtcctagaggagtgtagg 13085782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 34853303 - 34853554
Alignment:
Q  1 ttggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttcccca 100  Q
    ||||||||||||||||  ||||||||||||||||||| | ||||||||| | || |||||| |||||||| ||||||||||| |||||||  ||||| |     
T  34853303 ttggtgatagtgttaggtggagggtgggtgatggtgctgaaactctgttttggttgcatagatggattggtggttccccgcttagtgtgcgatttcctcg 34853402  T
Q  101 cttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttg 200  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||  | | |||| ||    
T  34853403 cttgtttgacttatctgagaacaaaaccattacagtggctactttgttctccatgggtctggagcagggtggggcggggtggagatggtgtcataggctg 34853502  T
Q  201 taggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgatg 252  Q
    | ||||||||| | | || |||||||||||||||||||| |||| |||||||    
T  34853503 tgggcgtgggatgggactttgctagaggagtgtagggcgttactatttgatg 34853554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 16873269 - 16873368
Alignment:
Q  116 tgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggag 215  Q
    |||||||||||||||| | ||||| | | |||||||| | || ||||||||||| ||||| |||||||| ||  | |||||||||| ||| |||||||||    
T  16873269 tgagaacaaaaccatttctgtggcgaatatgttctctcttggcctggagcagggaggggatgggtggaggtggagacgtaggttgtgggcttgggaggag 16873368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 49264792 - 49264861
Alignment:
Q  167 gggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||||||||||||||||||||  |||| ||||||| |||||||||||||  | |  ||||||||||||||    
T  49264792 gggtggggaggggtggagttggaggcgaaggttgtgggcgtgggaggagattgtcttagaggagtgtagg 49264861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 13867650 - 13867712
Alignment:
Q  174 gaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||| ||||| ||| |||||||||||   || ||||||||||| |||||||||||||||||||    
T  13867650 gaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtagg 13867712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 45795529 - 45795467
Alignment:
Q  174 gaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||| ||||| ||| |||||||||||   || ||||||||||| |||||||||||||||||||    
T  45795529 gaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtagg 45795467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 20795976 - 20795911
Alignment:
Q  171 ggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||||||||||||||||  |||| ||||||| |||||||||||||  | |  ||||||||||||||    
T  20795976 ggggaggggtggagttggaggcggaggttgtgggcgtgggaggagattgtcttagaggagtgtagg 20795911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 18671644 - 18671398
Alignment:
Q  5 tgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccacttg 104  Q
    ||||||||||||  ||||||| ||||||||||  || ||| | |||| ||||||||||||||| || |||||||||||  |||||| |||||| |  ||     
T  18671644 tgatagtgttagatggagggtaggtgatggtggtgcgacttttttctggtcgcataggtggatcggaggttccccgctttgtgtgcggtttcctcgttta 18671545  T
Q  105 tttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtagg 204  Q
    ||||| |||  ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  18671544 tttgacttagctgagaacaaaaccattacagtggcttctttgttctctttgggtctggagcagggtggggaggggtggagttggcggcgtaggttgtggg 18671445  T
Q  205 cgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    | |||||||||||| || ||||||||||||||||| |||| ||||||    
T  18671444 catgggaggaggctttgttagaggagtgtagggcgttactatttgat 18671398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 18767884 - 18767636
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    ||||||| |||||| ||||||||||| |||||| || | ||  |||||| |||||||||||||||||| ||| |   |||  |||||| |||||||| ||    
T  18767884 ggtgatattgttagacggagggtgggagatggtacaacgacgttgttctggtcgcataggtggattggaggtactttgctttgtgtgcggtttccccgct 18767785  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||| ||||||||||| |||||  ||||||||||| |||||  |||||||| ||||||||||||||| ||  ||||||| ||||     
T  18767784 tgtttgacttagcagagaataaaaccattacggtggcctctttgttctctttgggtacggagcaggatggggaggggtggaggtggaggcgtagattgtg 18767685  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    ||| |||||||||  | | |||||||||||||||||| |||| ||||||    
T  18767684 ggcttgggaggagcttttactagaggagtgtagggcgttactatttgat 18767636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 34457822 - 34458070
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| |||||||||||||||||| | || ||  |||||| |||||||||||||||||| ||||| |||||  ||||||  ||||||| ||    
T  34457822 ggtgatagtgttagacggagggtgggtgatggtactgcgacgttgttctggtcgcataggtggattggaggttctccgctttgtgtgcgatttccccgct 34457921  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||||||||||||||| || ||  ||||||||||| |||||  ||||||||  |||||||||||||| ||  || ||||  | |     
T  34457922 tgtttgacttagcagagaacaaaaccattacggtagcctctttgttctctttgggtacggagcaggagggggaggggtggagatggaggtgtagactttg 34458021  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||| ||||||  | | |||||||||||||||||| |||| ||||||    
T  34458022 ggcgtgagaggagcttttactagaggagtgtagggcgttactatttgat 34458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 8771790 - 8771662
Alignment:
Q  123 aaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgc 222  Q
    ||||||||||| |||||  |||||||||||  ||||  |||||||| ||||||||||||||||||  |||||||  ||| ||| |||||||||  | | |    
T  8771790 aaaaccattacggtggcctctttgttctcttcgggtacggagcaggatggggaggggtggagttggaggcgtagactgtgggcttgggaggagcttttac 8771691  T
Q  223 tagaggagtgtagggcgctactttttgat 251  Q
    ||||||||||||||||| |||| ||||||    
T  8771690 tagaggagtgtagggcgttactatttgat 8771662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 17856113 - 17856000
Alignment:
Q  102 ttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgt 201  Q
    |||||||| |||  |||||||||||||||| | ||||| | | |||||||| | || ||||||||||| ||||| |||||||||||| | ||||||||||    
T  17856113 ttgtttgacttagctgagaacaaaaccatttcggtggcgaatatgttctctcttggcctggagcagggaggggaagggtggagttgaagacgtaggttgt 17856014  T
Q  202 aggcgtgggaggag 215  Q
     ||| |||||||||    
T  17856013 gggcttgggaggag 17856000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 31025328 - 31025379
Alignment:
Q  164 gcagggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggag 215  Q
    ||||||||||||||||||||||||  |||| ||||||| |||||||||||||    
T  31025328 gcagggtggggaggggtggagttggaggcggaggttgtgggcgtgggaggag 31025379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 41339947 - 41339788
Alignment:
Q  57 cataggtggattggcggttccccgctcagtgtgcagtttccccacttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgg 156  Q
    |||||||||||||| ||||||| |||  | ||||||||||| |  || |||  |||| ||||||||||||     |||||||||| |||||||||  | |    
T  41339947 cataggtggattgggggttccctgctttgcgtgcagtttcctcggttatttacgttagttgagaacaaaaatgccacagtggctaatttgttctcccttg 41339848  T
Q  157 gtctggagcagggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggagg 216  Q
    ||||   ||| ||||||||||||||||| || ||  | ||||||| ||||||||||||||    
T  41339847 gtcttatgcatggtggggaggggtggaggtggcgatgcaggttgtgggcgtgggaggagg 41339788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 19728798 - 19728729
Alignment:
Q  168 ggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtaggg 237  Q
    ||||||||||||||||||||  | || ||||||| |||||||||||||| | |  |||||||||||||||    
T  19728798 ggtggggaggggtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtaggg 19728729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 36227982 - 36228063
Alignment:
Q  171 ggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgatg 252  Q
    |||| |||||||||||| || |||||  ||| |||||||||||| | | || || |||||||||||||| |||| |||||||    
T  36227982 ggggtggggtggagttggcgtcgtagactgtgggcgtgggaggaagatgtgttaaaggagtgtagggcgttactatttgatg 36228063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 36709386 - 36709138
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||| | ||    
T  36709386 ggtgatagtgttagacggagggtgggtgatggtgctgcaactctgttctggtcgcataggtggattggaggttccccgctgtgtgtgcagtttcctcgct 36709287  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||||||||||||||| |||||| ||||||||||  |||||  |||||||| ||||||||||||||||||  |||||||| | |     
T  36709286 tgtttgacttagcagagaacaaaaccattacggtggcttctttgttctccctgggtacggagcaggatggggaggggtggagttggaggcgtaggctatg 36709187  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||| ||||||   ||||||||||| ||||||||| |||| ||||||    
T  36709186 ggcgtgtgaggagaacatgctagaggactgtagggcgttactatttgat 36709138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 18368620 - 18368867
Alignment:
Q  4 gtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccactt 103  Q
    |||||||| |||| ||||||||||||||| |||| || ||| |||||| ||||||||||||||||||  ||||||||||  ||||||  ||||  |  ||    
T  18368620 gtgatagtattagacggagggtgggtgatagtgctgcgactttgttctggtcgcataggtggattggaagttccccgctttgtgtgcgttttcttcgatt 18368719  T
Q  104 gtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtag 203  Q
     ||||| |||  ||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  18368720 atttgacttagctgagaacaaaaccattacagtggcttctatattctctatgggtctggagcagggtggggaggggtggtgttggcggcgtaggttgtgg 18368819  T
Q  204 gcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    | ||||||||||||| |||||||||||||||||||  |||| ||||||    
T  18368820 gtgtgggaggaggctttgctagaggagtgtagggcattactatttgat 18368867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 15481423 - 15481669
Alignment:
Q  5 tgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccacttg 104  Q
    |||||||||||  |||||||||||||||||||  || |||||||||| ||||||||||||| |||| ||| | |||||   ||||| |||||| |  |||    
T  15481423 tgatagtgttatacggagggtgggtgatggtgttgcgactctgttctggtcgcataggtggtttggaggtccaccgctttttgtgcggtttcctcgtttg 15481522  T
Q  105 tttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtagg 204  Q
    ||||| |||   ||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||||  ||| |||| | | |     
T  15481523 tttgacttagcagagaacaaaaccattacggtggcttctttgttctctatgggcgtggagcagggtggggaggggtggagttggaggcctaggctatgga 15481622  T
Q  205 cgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||    
T  15481623 cgtgggaggaggctttgctagaggagtgtagggcgttactatttgat 15481669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 42675102 - 42675350
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| |||||||||||||||||| | || ||  |||||| ||||||||||||| |||| ||||| ||| |  |||||| |||||||| ||    
T  42675102 ggtgatagtgttagacggagggtgggtgatggtactgcgacgttgttctggtcgcataggtggcttggaggttctccgttttgtgtgcggtttccccgct 42675201  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| ||| | ||||||||||||||||| || ||  ||||||||||| |||||  ||||||||  |||||||||||||| ||  |||||||  | |     
T  42675202 tgtttgacttagtagagaacaaaaccattacggtagcctctttgttctctttgggtacggagcaggagggggaggggtggagatggaggcgtagactatg 42675301  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||||||||||  | | |||||||| ||||||||| |||| ||||||    
T  42675302 ggcgtgggaggagcttttactagaggaatgtagggcgttactatttgat 42675350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 45684652 - 45684404
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| ||||||||||| |||||| |  | |   |||||| |||||||||||||||||| ||| | || ||  | |||| |||||||| ||    
T  45684652 ggtgatagtgttagacggagggtgggagatggtacgtcgaagttgttctggtcgcataggtggattggaggtactcctctttgcgtgcggtttccccgct 45684553  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||| ||||||||||| |||||  |||||||||||  ||||  |||||||| ||||||||||||||||||  |||||||  |||     
T  45684552 tgtttgacttagcagagaataaaaccattacggtggcctctttgttctcttcgggtacggagcaggatggggaggggtggagttggaggcgtagactgtg 45684453  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    ||| |||||||||  | | |||||||||||||||||| |||| ||||||    
T  45684452 ggcttgggaggagcttttactagaggagtgtagggcgttactatttgat 45684404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 14867614 - 14867684
Alignment:
Q  168 ggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggc 238  Q
    ||||||||||||||||||||  | || ||||||| |||||||||||||| | |  ||||||||||||||||    
T  14867614 ggtggggaggggtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggc 14867684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 40513541 - 40513603
Alignment:
Q  174 gaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||||||||| ||| |||||||||||   || ||||||||||| |||||||||||||||||||    
T  40513541 gaggggtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtagg 40513603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 10868034 - 10867964
Alignment:
Q  167 gggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtaggg 237  Q
    |||||||||||||||||||||  |||| ||||||| || ||||||||||  | |  |||||||||||||||    
T  10868034 gggtggggaggggtggagttggaggcggaggttgtgggtgtgggaggagaatgtcttagaggagtgtaggg 10867964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 42614 - 42378
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| | ||||||||| |||||| |  | ||  |||||| |||||||||||||||||| ||| | |||||  |||||| |||||||||||    
T  42614 ggtgatagtgttagacagagggtgggagatggttcgacgacgttgttctggtcgcataggtggattggaggtactccgctttgtgtgcggtttccccact 42515  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||| ||||||||||| |||||  ||||||||||| |||||  |||||||| ||||||| ||||||||||  ||||||| ||||     
T  42514 tgtttgacttagcagagaataaaaccattacggtggcctctttgttctctttgggtacggagcaggatggggagaggtggagttggaggcgtagattgtg 42415  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcg 239  Q
    ||| |||||||||  | | ||||||||||||||||||    
T  42414 ggcttgggaggagcttttactagaggagtgtagggcg 42378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 38357943 - 38357695
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    ||||||||| |||| ||||||||||| |||||| |  | ||  |||||| || |||||| |||||||| ||| | |||||  |||||| |||||||| ||    
T  38357943 ggtgatagtattagacggagggtgggagatggtacgacgacgttgttctggttgcatagatggattggaggtactccgctttgtgtgcggtttccccgct 38357844  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||| ||||||||||| |||||  ||||||||||| ||||| ||||||||| ||||||||||||||| ||  ||||||| ||||     
T  38357843 tgtttgacttagcagagaataaaaccattacggtggcctctttgttctctttgggtatggagcaggatggggaggggtggaggtggaggcgtagtttgtg 38357744  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    ||| |||||||||  | | |||||||||||||||||| |||| ||||||    
T  38357743 ggcttgggaggagcttttactagaggagtgtagggcgttactatttgat 38357695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 6866782 - 6866657
Alignment:
Q  84 agtgtgcagtttccccacttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtgga 183  Q
    ||||||| |||||| |  |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6866782 agtgtgcggtttcctcgtttgtttgacttatctgagaacaaaaccattacagtggccactttgttctctatgggtctggagtagggtggggaggggtgga 6866683  T
Q  184 gttgacggcgtaggttgtaggcgtgg 209  Q
    |||| | ||||| | ||| |||||||    
T  6866682 gttggcagcgtaagctgtgggcgtgg 6866657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 11818127 - 11818018
Alignment:
Q  142 ctttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggcgct 241  Q
    ||||||||||| |||||  |||||||| ||||||||||||||| ||  ||||||| |||||||| |||||||||  | | |||||||||||||||||| |    
T  11818127 ctttgttctctttgggtacggagcaggatggggaggggtggaggtggaggcgtagattgtaggcttgggaggagcttttactagaggagtgtagggcgtt 11818028  T
Q  242 actttttgat 251  Q
    ||| ||||||    
T  11818027 actatttgat 11818018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 19513294 - 19513364
Alignment:
Q  168 ggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggc 238  Q
    ||||||||||||||||||||  |||| ||||||| |||||||||||||| | | |||||||||||||||||    
T  19513294 ggtggggaggggtggagttggaggcggaggttgtgggcgtgggaggaggttttactagaggagtgtagggc 19513364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 29094373 - 29094419
Alignment:
Q  205 cgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  29094373 cgtgggaggaggctttgctagaggagtgtagggctctactatttgat 29094419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 6866840 - 6866784
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcat 59  Q
    |||||||||||||| |||| ||||||||||||||  || |||||||||| |||||||    
T  6866840 ggtgatagtgttaggcggatggtgggtgatggtgttgcgactctgttctggtcgcat 6866784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 35122469 - 35122582
Alignment:
Q  102 ttgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgt 201  Q
    |||||||| |||  |||||||||||||||| | ||||| | | |||||||| | |  ||||||||||| ||||  |||||||| ||  | ||||||||||    
T  35122469 ttgtttgacttagctgagaacaaaaccatttctgtggcgaatatgttctctcttgacctggagcagggaggggttgggtggaggtggagacgtaggttgt 35122568  T
Q  202 aggcgtgggaggag 215  Q
     ||| |||||||||    
T  35122569 gggcttgggaggag 35122582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 44082676 - 44082924
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| ||||||||||| |||||| |  | |   |||||| |||||||||||||||||| ||| | |||||  |||||| |||||||| ||    
T  44082676 ggtgatagtgttagacggagggtgggagatggtacgacgatgttgttctggtcgcataggtggattggaggtactccgctttgtgtgcggtttccccgct 44082775  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||| ||||||||||| |||||  ||||||||||| |||||   ||||||| ||||||||||||||| ||  ||||||| ||||     
T  44082776 tgtttgacttagcagagaataaaaccattacggtggcatctttgttctctttgggtacagagcaggatggggaggggtggaggtggaggcgtagattgtg 44082875  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    ||| ||||| |||  | | |||||||||||||||||| |||| ||||||    
T  44082876 ggcttgggatgagcttttactagaggagtgtagggcgttactatttgat 44082924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 11394177 - 11394247
Alignment:
Q  168 ggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggc 238  Q
    ||||||||||||||||||||  |||| ||||||| |||||||||||||| | |  ||||||||||||||||    
T  11394177 ggtggggaggggtggagttggaggcggaggttgtgggcgtgggaggaggttttattagaggagtgtagggc 11394247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 12134630 - 12134569
Alignment:
Q  177 gggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggc 238  Q
    |||||||| || ||||||| ||||| ||||||||||||||   || ||||||||||||||||    
T  12134630 gggtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggc 12134569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 43253553 - 43253622
Alignment:
Q  167 gggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    ||||||||||||||||||| |  |||| ||||||| |||||||||||||  | |  ||||||||||||||    
T  43253553 gggtggggaggggtggagtcggaggcggaggttgtgggcgtgggaggagattgtcttagaggagtgtagg 43253622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 26694404 - 26694156
Alignment:
Q  3 ggtgatagtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccact 102  Q
    |||||||||||||| |||||||||||||||||| | || ||  |||||| ||||||||||||| |||  ||||| ||| |  |||||| ||| ||||  |    
T  26694404 ggtgatagtgttagacggagggtgggtgatggtactgcgacgttgttctggtcgcataggtggcttgaaggttctccgttttgtgtgcggttcccccgat 26694305  T
Q  103 tgtttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgta 202  Q
    ||||||| |||   ||||||||||||||||| || ||  ||||||||| | |||||  ||||||||  |||||||||||||| ||  |||||||  | |     
T  26694304 tgtttgacttagcagagaacaaaaccattacggtagcctctttgttctatttgggtacggagcaggagggggaggggtggagatggaggcgtagactatg 26694205  T
Q  203 ggcgtgggaggaggctatgctagaggagtgtagggcgctactttttgat 251  Q
    |||||||||||||  | | |||||||||||||||||| |||| ||||||    
T  26694204 ggcgtgggaggagcttcttctagaggagtgtagggcgttactatttgat 26694156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 53810301 - 53810068
Alignment:
Q  19 ggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccacttgtttgagttatttga 118  Q
    |||||||||||||||| || | |||| |||| | |||||||| | ||||||| |||   ||||| ||||||| |||||  |  |||||||| ||   |||    
T  53810301 ggagggtgggtgatggggctgaaactttgttttggtcgcataagcggattggtggtataccgcttagtgtgcggtttcgtcgtttgtttgacttggctga 53810202  T
Q  119 gaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggct 218  Q
    |||||||| |||||| |||||||  |||||||| |||||||||| || ||  ||||||||||||| ||| ||||| || |||| |||||||||||| | |    
T  53810201 gaacaaaatcattacggtggctaacttgttctcaatgggtctggcgcgggaaggggaggggtggacttggcggcgcagattgtgggcgtgggaggaagat 53810102  T
Q  219 atgctagaggagtgtagggcgctactttttgatg 252  Q
    ||| |||||||||||||| || |||| |||||||    
T  53810101 atgttagaggagtgtaggacgttactatttgatg 53810068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 4640445 - 4640592
Alignment:
Q  105 tttgagttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtagg 204  Q
    |||||||||  | ||||||||| |||||| ||||||  |||||||||| | ||||| | | |||| |||||||| |||||||| || || ||||||| ||    
T  4640445 tttgagttagataagaacaaaatcattacggtggctgatttgttctctcttggtctaggggagggaggggagggttggagttggcgtcgaaggttgtggg 4640544  T
Q  205 cgtgggaggaggctatgctagaggagtgtagggcgctactttttgatg 252  Q
    | ||||||||||   || |||||||||||||| | ||||| |||||||    
T  4640545 cttgggaggaggacttgttagaggagtgtaggactctactatttgatg 4640592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 43516565 - 43516627
Alignment:
Q  174 gaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagg 236  Q
    |||| ||||||||| ||||||||||||  || ||||||||||| |||||||||||||||||||    
T  43516565 gaggcgtggagttggcggcgtaggttgagggtgtgggaggaggatatgctagaggagtgtagg 43516627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 42953323 - 42953393
Alignment:
Q  168 ggtggggaggggtggagttgacggcgtaggttgtaggcgtgggaggaggctatgctagaggagtgtagggc 238  Q
    ||||||||||||||||||||  |||| ||||||| ||||||||| |||  | |  ||||||||||||||||    
T  42953323 ggtggggaggggtggagttggaggcggaggttgtgggcgtgggaagagagtttattagaggagtgtagggc 42953393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 15320 - 15563
Alignment:
Q  9 agtgttagtcggagggtgggtgatggtgcagcaactctgttctagtcgcataggtggattggcggttccccgctcagtgtgcagtttccccacttgtttg 108  Q
    |||||||  |||| |||||||||||| || | |||| | || | ||| |||||||||||||| |||  || ||| ||||||| |||||  |  |||||||    
T  15320 agtgttatccggaaggtgggtgatggggctgaaacttttttttggtcacataggtggattggtggtatcctgcttagtgtgcggtttcgtcgattgtttg 15419  T
Q  109 agttatttgagaacaaaaccattacagtggctactttgttctctatgggtctggagcagggtggggaggggtggagttgacggcgtaggttgtaggcgtg 208  Q
    | ||    ||||||||||| ||||| |||||||  || |||||  ||||||||| || |   |||||||||||||| || || || || |||| ||||||    
T  15420 acttggcagagaacaaaacgattacggtggctaactttttctcgctgggtctggcgcggcaaggggaggggtggaggtggcgtcgcagattgtgggcgtg 15519  T
Q  209 ggaggaggctatgctagaggagtgtagggcgctactttttgatg 252  Q
    |||||||| |||| ||||||||||||||||  |||| |||||||    
T  15520 ggaggaggatatgttagaggagtgtagggctttactatttgatg 15563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University