View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3003_low_13 (Length: 254)
Name: NF3003_low_13
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 2563575 - 2563793
Alignment:
| Q |
19 |
gctgctgcactttcagctgcttcaattgtctttaagaaaaaagataccaaatattcgttgaagctattaagacattcaaaatctgtgagcaattcaagta |
118 |
Q |
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| T |
2563575 |
gctgctgcactttcagctgcttcaattgtctttaagaaaaaagataccaaatattcgtcgaagctattaagacattcaaaatctgtgagcaattcaagta |
2563674 |
T |
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| Q |
119 |
ttattatatagtttattaataattgatcaattagttaaacaaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaa |
218 |
Q |
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| T |
2563675 |
ttat---atagtttattaat---tgatcaattagttaaacaaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaa |
2563768 |
T |
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| Q |
219 |
gtatagaggcacctacacaggttct |
243 |
Q |
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| T |
2563769 |
gtatagaggcacctacacaggttct |
2563793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 2573348 - 2573445
Alignment:
| Q |
19 |
gctgctgcactttcagctgcttcaattgtctttaagaaaaaagataccaaatattcgttgaagctattaagacattcaaaatctgtgagcaattcaag |
116 |
Q |
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| T |
2573348 |
gctgccgctctttctgctgcttcaattgtctttaagaaaacagatatcaattattcatccaagctattaagccagtcaaaatctgtaagcaattcaag |
2573445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 2573586 - 2573628
Alignment:
| Q |
187 |
tatgttttgtagttgtttgattttgctgacaagtatagaggca |
229 |
Q |
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| T |
2573586 |
tatgtttcgcagttgtttgattttgctgataagtatagaggca |
2573628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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