View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3003_low_18 (Length: 217)
Name: NF3003_low_18
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_low_18 |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 18029482 - 18029624
Alignment:
| Q |
75 |
cctatcatgaattacaaagcaacgtttgaaacaagctctatagcatcgacactgctgattgaaagcgtgtccgctgtccgaacatgacactgacacattg |
174 |
Q |
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| T |
18029482 |
cctatcatgaattacaatgcaacatttgaaacaagccctatagcatcgacactgctgattgaaagtgtgtccgctgtccgaacatgacactgacacattg |
18029581 |
T |
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| Q |
175 |
attacagtgagttaagtcattttctcaaattattagtggtgtc |
217 |
Q |
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| T |
18029582 |
attacagtgagttaagtcattttctcaaattattattggtgtc |
18029624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 18571030 - 18570980
Alignment:
| Q |
160 |
gacactgacacat-tgattacagtgagttaagtcattttctcaaattatta |
209 |
Q |
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| T |
18571030 |
gacactgacacatatgattacattgaattatgtcattttctcaaattatta |
18570980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 4909209 - 4909151
Alignment:
| Q |
160 |
gacactgacacat-tgattacagtgagttaagtcattttctcaaattattagtggtgtc |
217 |
Q |
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| T |
4909209 |
gacactgacacatatgattacaatgaattatgtaattttctcaaattattattggtgtc |
4909151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 18513243 - 18513292
Alignment:
| Q |
161 |
acactgacacat-tgattacagtgagttaagtcattttctcaaattatta |
209 |
Q |
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| T |
18513243 |
acactgacacatatgattacattgaattatgtcattttctcaaattatta |
18513292 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 40063995 - 40063951
Alignment:
| Q |
173 |
tgattacagtgagttaagtcattttctcaaattattagtggtgtc |
217 |
Q |
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| T |
40063995 |
tgattacaatgaattatgtcattttctcaaattattattggtgtc |
40063951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 9024177 - 9024225
Alignment:
| Q |
160 |
gacactgacacat-tgattacagtgagttaagtcattttctcaaattat |
207 |
Q |
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| T |
9024177 |
gacactgacacatatgattacattgaattatgtcattttctcaaattat |
9024225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 18288066 - 18288102
Alignment:
| Q |
173 |
tgattacagtgagttaagtcattttctcaaattatta |
209 |
Q |
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| T |
18288066 |
tgattatactgagttaagtcattttctcaaattatta |
18288102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 26238115 - 26238171
Alignment:
| Q |
161 |
acactgacacattgattacagtgagttaagtcattttctcaaattattagtggtgtc |
217 |
Q |
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| T |
26238115 |
acactgacacatatattacactgaattatgttattttctcaaattattagcggtgtc |
26238171 |
T |
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