View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3003_low_2 (Length: 418)
Name: NF3003_low_2
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 71 - 410
Target Start/End: Original strand, 4778037 - 4778376
Alignment:
| Q |
71 |
ggactaatgtttggttaatttaagggactaaattttcatttcgagaatttgaagtacttgtgcgatccttgaagttttgatgagcaaaatgctgctttac |
170 |
Q |
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| T |
4778037 |
ggactaatgtttggttaatttaagggactaaattttcatttcgagaatttgaagtacttgtgcgatccttgaagttttgatgagcaaaatgctgctttac |
4778136 |
T |
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| Q |
171 |
tctaccattttcactaaatatttctcagaataaggccctaactggtcattaaggagtgtaaggaaaatgaaaattatcaattagtgctcaaagggtttaa |
270 |
Q |
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| T |
4778137 |
tctaccattttcactaaatatttctcagaataaggccctaactggtcattaagaagtgtaaggaaaatgaaaattatcaattagtgctcaaagggtttaa |
4778236 |
T |
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| Q |
271 |
tgttggtcgaaattgtgcctaatgaaaactaaaacatccccaaaaactatactgaaaagactatttttcaccgacccttttaaagactaaattatttaga |
370 |
Q |
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| T |
4778237 |
tgttgatcgaaattgtgcccaatgaaaactaaaacatccccaaaaactatactgaaaagactaattttcaccgacctttttaaatactaaattatttaga |
4778336 |
T |
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| Q |
371 |
cctcaatatattttctcaagtatcagtttgagcctttgct |
410 |
Q |
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| T |
4778337 |
cgtcagtatattttctcaagtatcagtttgagcctttgct |
4778376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 4778006 - 4778067
Alignment:
| Q |
16 |
gttttcgaaagcgatacgtcctttcgtggatggactaatgtttggctaatttaagggactaa |
77 |
Q |
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| T |
4778006 |
gttttcgaaagcgatacgtcttttcgtggatggactaatgtttggttaatttaagggactaa |
4778067 |
T |
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