View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3003_low_20 (Length: 204)
Name: NF3003_low_20
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 41439371 - 41439210
Alignment:
| Q |
18 |
agagagtatccattggagaaagggaaacctgcagctacttaggagtttggacaataccataagagcatttttaactggatgtctttacctaacaatgatc |
117 |
Q |
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| T |
41439371 |
agagagtatccattggagaaagggaaacctgcagctacttaggagttaggacaataccataagagcatcttcaagtggatgtctttacct---aatgatc |
41439275 |
T |
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| Q |
118 |
attccttgttaaggatcttctattggaggaagagaaaatgagtttccattaaggaaagggtaact |
182 |
Q |
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| T |
41439274 |
actccttgttaaggatcttttattggaggaagagaaaatgagtttccattaaggaacgggtaact |
41439210 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 43786500 - 43786543
Alignment:
| Q |
139 |
attggaggaagagaaaatgagtttccattaaggaaagggtaact |
182 |
Q |
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| T |
43786500 |
attggaggaagagaaaatgagttcccgttaaggaacgggtaact |
43786543 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 37847260 - 37847303
Alignment:
| Q |
139 |
attggaggaagagaaaatgagtttccattaaggaaagggtaact |
182 |
Q |
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| T |
37847260 |
attggaggaagaaaaaatgagttcccattaaggaacgggtaact |
37847303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 2969356 - 2969306
Alignment:
| Q |
123 |
ttgttaaggatcttctattggaggaagagaaaatgagtttccattaaggaa |
173 |
Q |
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| T |
2969356 |
ttgttaaggatcctccattggaggaagagaaaatgagtccccatcaaggaa |
2969306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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