View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3003_low_3 (Length: 395)
Name: NF3003_low_3
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 781059 - 780683
Alignment:
| Q |
1 |
tttctcgagctcctcacttgtaggaaggcccatagacttttgcctctgatcaaactgttgaacaatacaagataacattaatcaagacggatcatgcgaa |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
781059 |
tttctcgagctcctcgcttgtaggaaggcccatagacttctgtctctgatcaaactgttgaacaatacaagataacattaattaagacggatcatgcgaa |
780960 |
T |
|
| Q |
101 |
acaaatacgatgacatattcaaaaacaaactagttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
780959 |
acaaatacgatgacatattcaaaaacaaactagttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcagg |
780860 |
T |
|
| Q |
201 |
ttcaactttttgggtgttaattagaggatcaccctttaccaaacatttccaccagtccatttgatcatgtttggttaaaagaatagaaactgtactttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
780859 |
ttcaactttttgggtgttaattagaggatcaccctttaccaaacatttccaccagtccatttgatcatgtttggttaaaagaatagaaactgtactttga |
780760 |
T |
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| Q |
301 |
tcctctgcaaacatagttttcaaaataattatcaaaacaccaaaatttcaaaggatcaaatccatcatggaattatg |
377 |
Q |
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| T |
780759 |
tcctctgcaaacatagttttcaaaataattagcaaaacaccaaaatttaaaagtatcaaatccatcatggaattatg |
780683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 770437 - 770615
Alignment:
| Q |
131 |
tagttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcaggttcaactttttgggtgttaattagaggatc |
230 |
Q |
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| T |
770437 |
tagttaccatcatcttttcaacggtcattcgagtctcagaatccaggtcaccaagtttgctgcttgcaggttcaactttttgggtgttaatttcaggatc |
770536 |
T |
|
| Q |
231 |
accctttaccaaacatttccaccagtccatttgatcatgtttggttaaaagaatagaaactgtactttgatcctctgca |
309 |
Q |
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| T |
770537 |
acccttaacaagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgca |
770615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 130 - 325
Target Start/End: Complemental strand, 785678 - 785484
Alignment:
| Q |
130 |
ctagttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcaggttcaactttttgggtgttaattagaggat |
229 |
Q |
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| T |
785678 |
ctagttaccatcatcttttcaacagtctgtcgagtctcaggatcaaggtcaccaagtttgctgctctcaggttcaactttttgggtgttaatttcaggat |
785579 |
T |
|
| Q |
230 |
caccctttaccaaacatttccaccagtccatttgatcatgtttggttaaaagaatagaaactgtactttgatcctctgcaaacatagttttcaaaa |
325 |
Q |
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| T |
785578 |
cacccttaacgagacatttccaccagtccatttgatcatgtttggttaaaagaatagaaagtgtattctgatcctctg-aaaaataggtttcaaaa |
785484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 785986 - 785909
Alignment:
| Q |
1 |
tttctcgagctcctcacttgtaggaaggcccatagacttttgcctctgatcaaactgttgaacaatacaagataacat |
78 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
785986 |
tttctggagctcctcacttgtaggaaggcccatagacttctgcctctgatcaaactgttaaataatacaagataacat |
785909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 770168 - 770242
Alignment:
| Q |
8 |
agctcctcacttgtaggaaggcccatagacttttgcctctgatcaaactgtt-gaacaatacaagataacattaa |
81 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
770168 |
agctcctcgcttgtaggaaggcccatagacttttgcctctgatcaaactgttggaacaatacagcataacattaa |
770242 |
T |
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