View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3003_low_5 (Length: 382)
Name: NF3003_low_5
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_low_5 |
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| [»] scaffold1640 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 25 - 372
Target Start/End: Complemental strand, 31980168 - 31979827
Alignment:
| Q |
25 |
agaacaaccagaagatcatcacagccacaacaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctcttggtggtc |
124 |
Q |
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| T |
31980168 |
agaacaaccagaagatcatcacagccacaacaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctcttggtggtc |
31980069 |
T |
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| Q |
125 |
accaaaatgctcacaaacaagaaagagctgctgctagatcaaaaaccatcaacctcaacaccac------caccaacaacgttgttcctttttcaccacc |
218 |
Q |
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| T |
31980068 |
accaaaatgctcacaaacaagaaagagctgctgctagatcaaaaaccatcaacctcaacaccaccaacaacaacaacaacgttgttcctttttcaccacc |
31979969 |
T |
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| Q |
219 |
accacagtcatatgtttctgaacaacatgaacaaggtggtttctttcatcatcatcaacatcattacccttattggcaacaaatggaacctatacagttt |
318 |
Q |
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| T |
31979968 |
accacagtcatatgtttctgaacaacatgaacaaggtggtttcttt------------catcattacccttattggcaacaaatggaacctatacagttt |
31979881 |
T |
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| Q |
319 |
caaacaccacaacaacatcatgttgaagcagcaacaaacacttttcatcctatg |
372 |
Q |
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| T |
31979880 |
caaacaccacaacaacatcatgttgaagcagcaacaaacacttttcatcctatg |
31979827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 25769354 - 25769311
Alignment:
| Q |
94 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
137 |
Q |
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| T |
25769354 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
25769311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 25774935 - 25774892
Alignment:
| Q |
94 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
137 |
Q |
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| T |
25774935 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
25774892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 33781929 - 33781999
Alignment:
| Q |
88 |
caccgaaaattctacacttctcaagctcttggtggtcaccaaaatgctcacaaacaagaaagagctgctgc |
158 |
Q |
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| T |
33781929 |
caccgcaagttctactcttctcaagctcttggtggccaccagaacgcacacaagctagagagagctgctgc |
33781999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1640 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1640
Description:
Target: scaffold1640; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 542 - 585
Alignment:
| Q |
94 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
137 |
Q |
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| T |
542 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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