View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3003_low_6 (Length: 328)
Name: NF3003_low_6
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3003_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 3858920 - 3858615
Alignment:
| Q |
18 |
tcaaaaaggttttagtgcttggtttaactataattttgatctctctggtttgagctatatgtaattttggtttatctagtttttctagtaacttttgtcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3858920 |
tcaaaaaggttttagtgcttggtttaactataattttgatctctctggtttgagctatatgtaattttggtttatctagtttttctagtaacttttgtcc |
3858821 |
T |
|
| Q |
118 |
ctcaaagtttttaattgttacaattaagtccctccatcaattttcatttactcaagactctcaaattcttatcatctactattaacaagtatcataattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3858820 |
ctcaaagtttttaattgttacaattaagtccctccatcaattttcatttactcaagactctcaaattcttatcatctactattaacaagtatcataattt |
3858721 |
T |
|
| Q |
218 |
gaattgattcaattattttaaagcattatttgcttccatcttcatgtgggtcatgacaaaggtctgaccgtacatgtgtgcaagggcaagtggctgctga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3858720 |
gaattgattcaattattttaaagcattatttgcttccatcttcatgtgggtcatgacaaaggtctgaccgtacatgtgtgcaagggtaagtggctgctga |
3858621 |
T |
|
| Q |
318 |
atggtg |
323 |
Q |
| |
|
|||||| |
|
|
| T |
3858620 |
atggtg |
3858615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University