View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3003_low_8 (Length: 314)

Name: NF3003_low_8
Description: NF3003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3003_low_8
NF3003_low_8
[»] chr8 (1 HSPs)
chr8 (1-297)||(38100063-38100359)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 38100359 - 38100063
Alignment:
Q  1 tcaccatgcagagaagagacaagtagaaaatnnnnnnntgcttcatcttcatatcaaaggacggttccttatgctaggggtagtttgggaaaggtaatta 100  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  38100359 tcaccatgcagagaagagacaagtagaaaatccccccctgcttcatcttcatatcaaaggacggttccttatgccaggggtagtttgggaaaggtattta 38100260  T
Q  101 tacattggcataatatttagtttttcattcgagttttgttaattaggtgctaattatgattatgaaacttaggtggccgaaagaatgaagggattgttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38100259 tacattggcataatatttagtttttcattcgagttttgttaattaggtgctaattatgattatgaaacttaggtggccgaaagaatgaagggattgttgt 38100160  T
Q  201 gtaaagcgcaaggacaaccaccattacaacaattattaaagcattctcattcattgcttaggtgatgcagaattaccaatatggacacggttctcag 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38100159 gtaaagcgcaaggacaaccaccattacaacaattattaaagcattctcattcattgcttaggtgatgcagaattaccaatatggacacggttctcag 38100063  T

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