View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3005_high_12 (Length: 279)

Name: NF3005_high_12
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3005_high_12
NF3005_high_12
[»] chr3 (3 HSPs)
chr3 (18-262)||(9344450-9344694)
chr3 (16-258)||(9448910-9449152)
chr3 (20-71)||(9341533-9341584)
[»] chr1 (1 HSPs)
chr1 (130-218)||(18991921-18992009)
[»] chr6 (9 HSPs)
chr6 (126-214)||(7047470-7047564)
chr6 (23-72)||(7030554-7030603)
chr6 (125-217)||(7026420-7026512)
chr6 (24-72)||(9158763-9158811)
chr6 (24-72)||(9171617-9171665)
chr6 (132-214)||(7042124-7042209)
chr6 (24-67)||(7042268-7042311)
chr6 (151-217)||(7013484-7013550)
chr6 (91-187)||(9171499-9171595)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 9344694 - 9344450
Alignment:
Q  18 cttccatccccaatcatcataacattttaccctttaagttcccactcctcaaattctcaaacacatatagcattgacattgattccatcaacaacaaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9344694 cttccatccccaatcatcataacattttaccctttaagttcccactcctcaaattctcaaacacatatagcattgacattgattccatcaacaacaaaga 9344595  T
Q  118 caatacttcattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaatt 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9344594 caatacttcattttgttacctcttcaaaaacattatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaatt 9344495  T
Q  218 gtccaaaactcatttggaaatacccaactgcatcatccactgtct 262  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  9344494 atccaaaactcatttggaaatacccaactgcatcatccactgtct 9344450  T

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Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 9449152 - 9448910
Alignment:
Q  16 cacttccatccccaatcatcataacattttaccctttaagttcccactcctcaaattctcaaacacatatagcattgacattgattccatcaacaacaaa 115  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||| ||| || ||||||||||||||||| |||    
T  9449152 cacttccatcccaaatcatcataacattttacccttcaaattcccactcctcaaattctcatacacctatatcatcgatattgattccatcaacaataaa 9449053  T
Q  116 gacaatacttcattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaa 215  Q
    ||||| ||||| |||||| ||||||  ||||||| |||||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||    
T  9449052 gacaacacttccttttgtcacctctcaaaaaacaatatcttcctcatcaaaccaaaacaacaacaacaataccaaaccctaggcccttggttgataagaa 9448953  T
Q  216 ttgtccaaaactcatttggaaatacccaactgcatcatccact 258  Q
    ||||||||| |||| ||||||| |||||||||||||| |||||    
T  9448952 ttgtccaaagctcaattggaaaaacccaactgcatcacccact 9448910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 9341584 - 9341533
Alignment:
Q  20 tccatccccaatcatcataacattttaccctttaagttcccactcctcaaat 71  Q
    |||||||| ||||| |||||||| |||||||| || ||||||||||||||||    
T  9341584 tccatcccaaatcaccataacatcttacccttcaaattcccactcctcaaat 9341533  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 18992009 - 18991921
Alignment:
Q  130 ttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaattg 218  Q
    ||||||||||| |||| |||  ||||||||||||||||||   || ||| ||||| |||||||||| || ||||||||||| |||||||    
T  18992009 ttgttacctctccaaacacaacatcttcctcatcaaaccacctcaacaagaacaacaacaaaccctccgtccttggttgatcagaattg 18991921  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 7047564 - 7047470
Alignment:
Q  126 cattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaaga---acaaacccta---cgcccttggttgataaga 214  Q
    |||| ||| |||||| |||| | | |||||||||||||||||||  |||||||||||||||   ||||||||||   ||||||||||||||||||    
T  7047564 cattctgtcacctctccaaacaaaatatcttcctcatcaaaccaccacagcaacaacaagaacaacaaaccctacttcgcccttggttgataaga 7047470  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 7030603 - 7030554
Alignment:
Q  23 atccccaatcatcataacattttaccctttaagttcccactcctcaaatt 72  Q
    ||||||||||||||| | ||||||||||| |||||| |||||||||||||    
T  7030603 atccccaatcatcatcaaattttacccttcaagttctcactcctcaaatt 7030554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 7026512 - 7026420
Alignment:
Q  125 tcattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaatt 217  Q
    |||||||||||| ||  |||| | | |||||||||||||||||||  ||| ||| |||||   | |||||||||||||| |||||||||||||    
T  7026512 tcattttgttacatcaccaaacaaaatatcttcctcatcaaaccaccacaacaagaacaaaccctaaccctacgccctttgttgataagaatt 7026420  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 9158763 - 9158811
Alignment:
Q  24 tccccaatcatcataacattttaccctttaagttcccactcctcaaatt 72  Q
    ||||||||||||||  ||||| |||||| ||||||||||||||||||||    
T  9158763 tccccaatcatcatcccatttcacccttcaagttcccactcctcaaatt 9158811  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 9171665 - 9171617
Alignment:
Q  24 tccccaatcatcataacattttaccctttaagttcccactcctcaaatt 72  Q
    ||||||||||||||  ||||| |||||| ||||||||||||||||||||    
T  9171665 tccccaatcatcatcccatttcacccttcaagttcccactcctcaaatt 9171617  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 7042209 - 7042124
Alignment:
Q  132 gttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaacccta---cgcccttggttgataaga 214  Q
    ||||||||| |||| | | | |||||||||||||||||  ||| ||||||||| ||||||| |||   ||||||||||||||||||    
T  7042209 gttacctctccaaacataatttcttcctcatcaaaccaccacaacaacaacaacaacaaactctacttcgcccttggttgataaga 7042124  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 7042311 - 7042268
Alignment:
Q  24 tccccaatcatcataacattttaccctttaagttcccactcctc 67  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||    
T  7042311 tcccaaatcatcatcacattttacccttcaagttcccactcctc 7042268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 7013550 - 7013484
Alignment:
Q  151 tatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaatt 217  Q
    |||||||||||||||||||  ||||||| |||||   | || ||||||||||| |||||||||||||    
T  7013550 tatcttcctcatcaaaccaccacagcaagaacaaaccctaaacctacgcccttcgttgataagaatt 7013484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 9171595 - 9171499
Alignment:
Q  91 tgacattgattccatcaacaacaaagacaatacttcattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaa 187  Q
    |||||||||| ||||||||| |||  |||| |||||||| |||||||||  |||| | | | ||| ||||||| |||||  ||| ||||||||||||    
T  9171595 tgacattgataccatcaacagcaacaacaacacttcattctgttacctcaccaaacaaaatctctacctcatccaaccaccacaacaacaacaagaa 9171499  T

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