View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_high_18 (Length: 243)
Name: NF3005_high_18
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_high_18 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 43816777 - 43816661
Alignment:
| Q |
127 |
acaattacaaaatatatagacatagtacgaagaaaattaagtatttgaataagtcggtcatatttggattccacttgaaataaattaatagactttacag |
226 |
Q |
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| T |
43816777 |
acaattacaaaatatatagacatagtacgaagaaaattaagtatttgaataagtcggtcatatttggattccacttgaaataatttaatagactttacaa |
43816678 |
T |
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| Q |
227 |
ttcatgagtagattttt |
243 |
Q |
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| T |
43816677 |
ttcatgagtagattttt |
43816661 |
T |
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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 43816886 - 43816822
Alignment:
| Q |
18 |
agccgtcactctgtttgggctattctaactgttgtcgtagtctttgaattcagtataggtacgta |
82 |
Q |
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| T |
43816886 |
agccgtcactctgtttgggctattctaactgttgtcgtagtctttgaattcagtataggtacgta |
43816822 |
T |
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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 43824826 - 43824765
Alignment:
| Q |
20 |
ccgtcactctgtttgggctattctaactgttgtcgtagtctttgaattcagtataggtacgt |
81 |
Q |
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| T |
43824826 |
ccgtcattctgtttgggctattctcaccgtcgtcgtcgtctttgaattcagtataggtacgt |
43824765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 43831783 - 43831726
Alignment:
| Q |
25 |
actctgtttgggctattctaactgttgtcgtagtctttgaattcagtataggtacgta |
82 |
Q |
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| T |
43831783 |
actctgtttgggctattctcaccgttgtagttgtctttgaattcagtataggtacgta |
43831726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 31805414 - 31805467
Alignment:
| Q |
25 |
actctgtttgggctattctaactgttgtcgtagtctttgaattcagtataggta |
78 |
Q |
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| T |
31805414 |
actctgtttgggctattcttactgttgttgtcgtctttgagttcagtataggta |
31805467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 50243146 - 50243199
Alignment:
| Q |
25 |
actctgtttgggctattctaactgttgtcgtagtctttgaattcagtataggta |
78 |
Q |
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| T |
50243146 |
actctatttgggctattctcactgttgtcgttgttttcgaattcagcataggta |
50243199 |
T |
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