View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3005_high_2 (Length: 475)

Name: NF3005_high_2
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3005_high_2
NF3005_high_2
[»] chr6 (11 HSPs)
chr6 (9-258)||(5738789-5739037)
chr6 (147-258)||(1126444-1126556)
chr6 (17-82)||(9953196-9953261)
chr6 (9-79)||(2371565-2371635)
chr6 (16-82)||(23379588-23379654)
chr6 (16-82)||(23388927-23388993)
chr6 (9-79)||(34501566-34501636)
chr6 (417-460)||(23388564-23388607)
chr6 (417-460)||(9953583-9953626)
chr6 (417-459)||(13096113-13096155)
chr6 (26-90)||(28665939-28666003)
[»] chr3 (25 HSPs)
chr3 (16-258)||(55032537-55032778)
chr3 (148-258)||(55035532-55035642)
chr3 (16-101)||(6445417-6445502)
chr3 (9-82)||(17532492-17532565)
chr3 (22-101)||(9392053-9392132)
chr3 (16-96)||(28265160-28265240)
chr3 (14-82)||(35411834-35411902)
chr3 (14-82)||(53815129-53815197)
chr3 (16-82)||(23299328-23299394)
chr3 (16-81)||(52198464-52198529)
chr3 (16-82)||(6922049-6922115)
chr3 (9-79)||(16185434-16185504)
chr3 (9-79)||(18645519-18645589)
chr3 (9-77)||(54736631-54736699)
chr3 (17-79)||(538175-538237)
chr3 (9-79)||(10884170-10884240)
chr3 (33-82)||(54460552-54460601)
chr3 (26-77)||(8462338-8462389)
chr3 (417-460)||(42354887-42354930)
chr3 (17-79)||(10107405-10107467)
chr3 (261-304)||(55032462-55032506)
chr3 (417-460)||(538582-538625)
chr3 (26-89)||(17537515-17537578)
chr3 (26-90)||(10880946-10881010)
chr3 (26-90)||(31548721-31548785)
[»] chr8 (18 HSPs)
chr8 (9-258)||(5540587-5540843)
chr8 (26-159)||(23612748-23612880)
chr8 (16-101)||(17895273-17895358)
chr8 (16-82)||(25595459-25595525)
chr8 (17-82)||(33878013-33878078)
chr8 (16-82)||(25592274-25592340)
chr8 (17-96)||(10663171-10663250)
chr8 (16-82)||(18722085-18722151)
chr8 (14-79)||(43682575-43682640)
chr8 (9-82)||(45156693-45156766)
chr8 (14-78)||(20520109-20520173)
chr8 (16-79)||(25228171-25228234)
chr8 (417-460)||(18721746-18721789)
chr8 (417-460)||(25595122-25595165)
chr8 (422-460)||(23613157-23613195)
chr8 (422-460)||(25591938-25591976)
chr8 (417-460)||(18696405-18696448)
chr8 (33-82)||(30640685-30640734)
[»] scaffold0080 (2 HSPs)
scaffold0080 (320-460)||(26706-26846)
scaffold0080 (9-79)||(26397-26467)
[»] chr5 (16 HSPs)
chr5 (311-460)||(39191934-39192083)
chr5 (16-131)||(22937785-22937896)
chr5 (9-81)||(21336497-21336569)
chr5 (14-78)||(28788179-28788243)
chr5 (14-81)||(21827796-21827863)
chr5 (9-79)||(32837235-32837305)
chr5 (9-82)||(37214918-37214991)
chr5 (26-90)||(40916654-40916718)
chr5 (26-81)||(21333481-21333536)
chr5 (14-82)||(39191488-39191556)
chr5 (9-74)||(14376638-14376702)
chr5 (16-79)||(42061645-42061708)
chr5 (9-79)||(43490945-43491015)
chr5 (16-77)||(31863031-31863092)
chr5 (9-77)||(28441961-28442029)
chr5 (26-90)||(7270399-7270463)
[»] chr4 (23 HSPs)
chr4 (9-101)||(19861043-19861135)
chr4 (18-90)||(33410729-33410801)
chr4 (11-82)||(3798571-3798642)
chr4 (16-131)||(40617542-40617653)
chr4 (26-90)||(27013399-27013463)
chr4 (9-82)||(15431316-15431389)
chr4 (9-82)||(15437930-15438003)
chr4 (9-90)||(19865410-19865491)
chr4 (9-94)||(53093873-53093957)
chr4 (9-79)||(37104039-37104109)
chr4 (14-83)||(12237511-12237580)
chr4 (17-77)||(5669788-5669848)
chr4 (16-79)||(18910763-18910826)
chr4 (9-79)||(5721749-5721819)
chr4 (9-79)||(9717103-9717173)
chr4 (17-83)||(49269895-49269960)
chr4 (17-82)||(5680629-5680694)
chr4 (26-90)||(48014707-48014771)
chr4 (417-460)||(11703063-11703106)
chr4 (392-460)||(37103680-37103748)
chr4 (26-90)||(12782286-12782350)
chr4 (26-90)||(19820111-19820175)
chr4 (26-90)||(19826872-19826936)
[»] scaffold0381 (1 HSPs)
scaffold0381 (26-90)||(6320-6384)
[»] chr2 (17 HSPs)
chr2 (14-82)||(10600120-10600188)
chr2 (9-82)||(25873355-25873428)
chr2 (9-82)||(38006061-38006134)
chr2 (16-96)||(25139801-25139881)
chr2 (14-82)||(25821692-25821760)
chr2 (9-82)||(36809210-36809283)
chr2 (9-79)||(26358824-26358894)
chr2 (9-79)||(29439727-29439797)
chr2 (9-82)||(25869987-25870060)
chr2 (22-78)||(16788553-16788609)
chr2 (26-82)||(30275467-30275523)
chr2 (26-90)||(30925920-30925984)
chr2 (417-460)||(1507112-1507155)
chr2 (417-460)||(1503908-1503951)
chr2 (417-460)||(15704449-15704492)
chr2 (417-460)||(15719703-15719746)
chr2 (392-460)||(26365504-26365572)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-83)||(61756-61823)
[»] chr7 (9 HSPs)
chr7 (16-82)||(45287912-45287978)
chr7 (17-82)||(45291248-45291313)
chr7 (16-79)||(8276171-8276234)
chr7 (16-79)||(26556669-26556732)
chr7 (9-79)||(10431538-10431608)
chr7 (9-82)||(4542226-4542298)
chr7 (28-79)||(2442056-2442107)
chr7 (40-91)||(13810180-13810231)
chr7 (26-90)||(17730185-17730249)
[»] chr1 (7 HSPs)
chr1 (9-79)||(2793451-2793521)
chr1 (16-82)||(49499343-49499409)
chr1 (9-82)||(1951120-1951193)
chr1 (15-79)||(42021881-42021945)
chr1 (9-91)||(34733030-34733111)
chr1 (9-79)||(29644086-29644156)
chr1 (356-387)||(30604682-30604713)
[»] scaffold0270 (3 HSPs)
scaffold0270 (15-82)||(834-901)
scaffold0270 (15-82)||(4194-4261)
scaffold0270 (15-82)||(11324-11391)
[»] scaffold0005 (1 HSPs)
scaffold0005 (9-79)||(291115-291185)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-79)||(197383-197453)
[»] scaffold0009 (1 HSPs)
scaffold0009 (40-90)||(34989-35039)
[»] scaffold0062 (2 HSPs)
scaffold0062 (417-460)||(53361-53404)
scaffold0062 (417-460)||(68260-68303)
[»] scaffold0321 (1 HSPs)
scaffold0321 (27-79)||(3624-3676)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 5739037 - 5738789
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattt 108  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  5739037 agcaaaggatgaggttcattcgacattggttaaaacgcgtcacgatggctatttcgtgacacgattttaggaaccctaatttgaaagtatttattt--tt 5738940  T
Q  109 tggtattgtgaattaaacaaaaggaaaatagaccacaagaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgc 208  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5738939 tggtagtgtgaattaaacaaaaggaaaatagaccacatgaagtagtatgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgc 5738840  T
Q  209 taaatggatcaatgagaaggactaaggaattga-ccgtaaataacatgctt 258  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  5738839 taaatggatcaatgagaaggattaaggagttgacccgtaaataacatgctt 5738789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 1126556 - 1126444
Alignment:
Q  147 gaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatggatcaatgagaaggactaaggaattga-ccgt 245  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  1126556 gaagtagtatgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatggatcaatgagaaggattaaggagttgacccgt 1126457  T
Q  246 aaataacatgctt 258  Q
    |||||||||||||    
T  1126456 aaataacatgctt 1126444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 9953196 - 9953261
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  9953196 atgaggttcattcgacattggttaaaacgtgtcacgatagctatttcgtgacacgattttaggaac 9953261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 2371565 - 2371635
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  2371565 agcacaggacgaggttcattcgacattggttaaaacgtgtcatgatggctatttcgtgacacgattttagg 2371635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 23379654 - 23379588
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| | ||||||||| |||||||||||||||||  |||||||||||||||||| |||||||    
T  23379654 gatgaggttcactcgacattgattaaaacgtgtcacgatagctatttcgtgacacgattctaggaac 23379588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 23388993 - 23388927
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| | ||||||||| |||||||||||||||||  |||||||||||||||||| |||||||    
T  23388993 gatgaggttcactcgacattgattaaaacgtgtcacgatagctatttcgtgacacgattctaggaac 23388927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 34501566 - 34501636
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| |||||||||| | ||||||||||||||||| ||||||| |||||| ||||||||    
T  34501566 agcataggatgaggttcattcgacattagctaaaacgtgtcacgatggctatttcatgacacaattttagg 34501636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 23388607 - 23388564
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  23388607 ttgaggagcaacgccgacaacgacgaaactctatcggtttattt 23388564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 9953583 - 9953626
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  9953583 ttgaggagcaacgccgacaacgacgaaactctatcggcttattt 9953626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 13096155 - 13096113
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttatt 459  Q
    |||| |||||||  |||||||||||||||||||||||||||||    
T  13096155 ttgaagagcaacaccgacaacgacgaaactctatcggtttatt 13096113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 28666003 - 28665939
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  28666003 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 28665939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 55032778 - 55032537
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattttggtatt 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |    
T  55032778 gatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctgatttgaaagtattttttt-ttttggtagt 55032680  T
Q  116 gtgaattaaacaaaaggaaaatagaccacaagaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatgg 215  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55032679 gtgaattaatcaaaaggaaaatagaccataggaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatgg 55032580  T
Q  216 atcaatgagaaggactaaggaattgaccgtaaataacatgctt 258  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  55032579 atcaatgagaaggattaaggagttgaccgtaaataacatgctt 55032537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 55035642 - 55035532
Alignment:
Q  148 aagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatggatcaatgagaaggactaaggaattgaccgtaa 247  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  55035642 aagtagtttgggagcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatggatcaatgagaaggattaaggagttgaccgtaa 55035543  T
Q  248 ataacatgctt 258  Q
    |||||||||||    
T  55035542 ataacatgctt 55035532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 6445502 - 6445417
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtattta 101  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||    
T  6445502 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaactctaatttgtaagtgttta 6445417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 17532565 - 17532492
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17532565 agcacaggatgaggttcattcgatattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 17532492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 9392053 - 9392132
Alignment:
Q  22 gtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtattta 101  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||    
T  9392053 gtttattcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttaagaatcctaatttgaaagtgttta 9392132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 28265160 - 28265240
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagt 96  Q
    ||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||    
T  28265160 gatgaagttcattcgacattggttaaaacgtgtcacggtggctatttcgtgacacgattttaggaactctaatttgtaagt 28265240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 35411834 - 35411902
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  35411834 aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 35411902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 53815129 - 53815197
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  53815129 aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 53815197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 23299394 - 23299328
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  23299394 gatgaggttcattcgacattgattaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 23299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 52198464 - 52198529
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 81  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  52198464 gatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaa 52198529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 6922049 - 6922115
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  6922049 gatgaggttcattcaacattggtgaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 6922115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 16185504 - 16185434
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  16185504 agcacaggatgaggttcactcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttagg 16185434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 18645589 - 18645519
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  18645589 agcacaggatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacacgattttagg 18645519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 54736699 - 54736631
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    |||| ||||||||||| |||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  54736699 agcataggatgaggttcattcggtattggttaaaacgtgtcacgatgtctatttcgtgacacgatttta 54736631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 538175 - 538237
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  538175 atgaagttcattcgacattggttaaaacgtgttacgatggttatttcgtgacacgattttagg 538237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 10884170 - 10884240
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||| ||||| ||||||||||| ||||||||||||| |||| | |||||||||||||||||||||    
T  10884170 agcacaggattaggttcattcgacattgattaaaacgtgtcatgatggccatttcgtgacacgattttagg 10884240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 54460552 - 54460601
Alignment:
Q  33 attggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  54460552 attggttaaaacgtgtcacgatggctatttcgtgacacgattttaagaac 54460601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 8462389 - 8462338
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  8462389 attcgacattgattaaaacgtatcacgatggctatttcgtgacacgatttta 8462338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 42354930 - 42354887
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  42354930 ttgaggagcaacgccgacatcgacgaaactctatcggtttattt 42354887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 10107467 - 10107405
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||| ||| |||||||||||||||| || ||||||  ||||||||||||||||||||||    
T  10107467 atgaagttaatttgacattggttaaaacgcgttacgatggttatttcgtgacacgattttagg 10107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 55032506 - 55032462
Alignment:
Q  261 atgacctatataa-gaaagctagcaggcgtcactcttggatatac 304  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  55032506 atgacctatataaagaaagctagcaggcatcactcttggatatac 55032462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 538582 - 538625
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||||||||| || ||||||||||||||| ||||||||||    
T  538582 ttgaggagcaacgtagaaaacgacgaaactctaacggtttattt 538625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 17537515 - 17537578
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatt 89  Q
    |||||| |||| | ||||||||||||| | || ||||||||||||||||| || ||||||||||    
T  17537515 attcgatattgatgaaaacgtgtcacggttaccatttcgtgacacgatttgagaaaccctaatt 17537578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 10880946 - 10881010
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  10880946 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 10881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 31548721 - 31548785
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  31548721 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 31548785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 5540843 - 5540587
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatt----- 103  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||         
T  5540843 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacatgattttaggaacc-taatttgaaagtatttattgtttt 5540745  T
Q  104 ---tattttggtattgtgaattaaacaaaaggaaaatagaccacaagaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcat 200  Q
       | |||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5540744 tttttttttggtagtgtgaattaaacaaaaggaaaatagaccacaggagttagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcat 5540645  T
Q  201 tgatgtgctaaatggatcaatgagaaggactaaggaattgaccgtaaataacatgctt 258  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  5540644 tgatgtgctaaatggatcaatgagaaggattaaggagttgaccgtaaataacatgctt 5540587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 23612748 - 23612880
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattttggtattgtgaattaaa 125  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| || |||| |||||||||||| ||||| |  |||||||||||    
T  23612748 attcgacattgtttaaaacgtgtcacaatggctatttcgtgacacgattttaggaaccttagtttggaagtatttattt-ttttgatggtgtgaattaaa 23612846  T
Q  126 caaaaggaaaatagaccacaagaagtagtttggg 159  Q
    |||||| |||| ||||||||  ||||||| ||||    
T  23612847 caaaagaaaaacagaccacataaagtagtatggg 23612880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 17895358 - 17895273
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtattta 101  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||    
T  17895358 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaactctaatttgtaagtgttta 17895273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 25595525 - 25595459
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25595525 gatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 25595459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 33878078 - 33878013
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33878078 atgaggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 33878013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 25592340 - 25592274
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25592340 gatgaggttcattcgacattggttaaaacgtgttacgatgactatttcgtgacacgattttaggaac 25592274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 10663171 - 10663250
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagt 96  Q
    |||||||| | ||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| ||||    
T  10663171 atgaggttcaatcgacattggttaaaacgtgtcacgatggatatttcgtgacacgattttaggaatcctaatttgcaagt 10663250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 18722151 - 18722085
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  18722151 gatgaggttcattcgatatcggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 18722085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 43682640 - 43682575
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  43682640 aggatgaggttcattcgacattggttaaaacgtgtcacgacggctatttcgtgacacgattttagg 43682575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 45156766 - 45156693
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||    
T  45156766 agcacaggatgaggttcattcgacattgattaaaacgtgtcacaatggctatttcgtgacacgattttaggaac 45156693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 20520109 - 20520173
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttag 78  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  20520109 aggatgaggttcattcgacattggttaaaacgtgtcacaatggctatttcgtgacacgattttag 20520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 25228171 - 25228234
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  25228171 gatgaggttcattcgacattggttaaaacgtgttacgatggttatttcgtgacacgattttagg 25228234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 18721789 - 18721746
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  18721789 ttgaggagcaacgccgacaacgacgaaactctatcggtttattt 18721746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 25595165 - 25595122
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  25595165 ttgaggagcaacgccgacaacgacgaaactctatcggtttattt 25595122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 422 - 460
Target Start/End: Original strand, 23613157 - 23613195
Alignment:
Q  422 gagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23613157 gagcaacgtcgacaacgacgaaactctatcggtttattt 23613195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 422 - 460
Target Start/End: Complemental strand, 25591976 - 25591938
Alignment:
Q  422 gagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25591976 gagcaacgtcgacaacgacgaaactctatcggtttattt 25591938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 18696448 - 18696405
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  18696448 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 18696405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 30640685 - 30640734
Alignment:
Q  33 attggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||| ||||    
T  30640685 attggttaaaacgtgtaacgatgtgtatttcgtgacgcgattttaagaac 30640734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 320 - 460
Target Start/End: Original strand, 26706 - 26846
Alignment:
Q  320 acggttttgggaagaaaacgaagccgcacgcgttacgagagaggggaaggcacatgaacatagaagaacttcatcaacagtagcgattggaattaatttg 419  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26706 acggttttgggaagaaaacgaagccccacgtgtcacgagagaggggaaggcacatgaacatagaagaacttcatcaacagtagcgattggaattaatttg 26805  T
Q  420 aggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26806 aggagcaacgtcgacaacgacgaaactctatcggtttattt 26846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 26397 - 26467
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  26397 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtaacacggttttagg 26467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 311 - 460
Target Start/End: Original strand, 39191934 - 39192083
Alignment:
Q  311 tcacattttacggttttgggaagaaaacgaagccgcacgcgttacgagagaggggaaggcacatgaacatagaagaacttcatcaacagtagcgattgga 410  Q
    |||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39191934 tcacgttttacggttttgggaagaaaaagaagccacacgcgtcacgagagaggggaaggcacatgaacatagaagaacttcatcaacaatagcgattgga 39192033  T
Q  411 attaatttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  39192034 attaatttaaggagcaacgtcgacaacgacgaaactctatcgatttattt 39192083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 22937896 - 22937785
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattttggtatt 115  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| || || |||   |    
T  22937896 gatgaggttcattcgacattgattaaaacgtgtcacgatggctatttcgtgacacgattttaggaaccctaatttggaagt-tttactttttgtgg---t 22937801  T
Q  116 gtgaattaaacaaaag 131  Q
    ||||||||||||||||    
T  22937800 gtgaattaaacaaaag 22937785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 21336569 - 21336497
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 81  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21336569 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 21336497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 28788243 - 28788179
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttag 78  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28788243 aggatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttag 28788179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 21827863 - 21827796
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 81  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21827863 aggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 21827796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 32837235 - 32837305
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32837235 agcataggatgagtttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 32837305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 37214918 - 37214991
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  37214918 agcacaggatgaggttcattcgacattggttaaaacgtgtcatgatggctatttcgtgacacgattttaggaac 37214991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 40916718 - 40916654
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  40916718 attcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttacgaaccttaattt 40916654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 21333536 - 21333481
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 81  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21333536 attcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 21333481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 39191488 - 39191556
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||| ||||    
T  39191488 aggatgaggtttattcgatattggttaaaacgtgtcacaatgtctatttcgtaacacgattttaagaac 39191556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 14376702 - 14376638
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatt 74  Q
    |||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  14376702 agcacaggatgaggttcattcgacattg-ttaaaacgtgtcacgatggctatttcgtgacacgatt 14376638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 42061645 - 42061708
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||| ||||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  42061645 gatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacatgattttagg 42061708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 43490945 - 43491015
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||| | ||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  43490945 agcacaggatgaggttcatttggcattggttaaaacgtatcacgatgtctatttcgtaacacgattttagg 43491015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 31863031 - 31863092
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    ||||| ||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  31863031 gatgaagttcattcgacattgtttaaatcgtgtcacgatggctatttcgtgacacgatttta 31863092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 28442029 - 28441961
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    |||| ||||||||||| | || ||||||| |||||||||||| |||| |||||||||||||||||||||    
T  28442029 agcacaggatgaggttcactcaacattggctaaaacgtgtcatgatggctatttcgtgacacgatttta 28441961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 7270399 - 7270463
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| ||| ||| |||||||    
T  7270399 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatagaaactctaattt 7270463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 19861135 - 19861043
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtattta 101  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  19861135 agcacaggatgaggttcattcgacattggttaaaacgtgtcaagatggctatttcgtgacacgattttaggaaccctaatttgtaagtgttta 19861043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 33410801 - 33410729
Alignment:
Q  18 tgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33410801 tgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaaccctaattt 33410729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 3798642 - 3798571
Alignment:
Q  11 caaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3798642 caaaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 3798571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 40617653 - 40617542
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattttggtatt 115  Q
    ||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| || || |||   |    
T  40617653 gatgaggttcattcgacattgattaaaacgagtcacgatggctatttcgtgacacgattttaggaaccttaatttgaaagt-tttactttttgtgg---t 40617558  T
Q  116 gtgaattaaacaaaag 131  Q
    ||||||||||||||||    
T  40617557 gtgaattaaacaaaag 40617542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 27013399 - 27013463
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27013399 attcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaaccctaattt 27013463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 15431316 - 15431389
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  15431316 agcacaggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 15431389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 15437930 - 15438003
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  15437930 agcacaggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 15438003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 19865491 - 19865410
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||| ||||||||||| ||||||||||||||||||||||  | |||| ||||||||||||||||||||||||||||||||||    
T  19865491 agcacaggatgaggttcattcgacattggttaaaacgtgctaagatggctatttcgtgacacgattttaggaaccctaattt 19865410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 53093873 - 53093957
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaa 94  Q
    |||| ||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  53093873 agcacaggatgaggttcattcgacattggt-agaacgtgtcacgatggctatttcgtgacacgattttagaaaccctaatttgaaa 53093957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 37104109 - 37104039
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  37104109 agcacaggatgaggttcattcgacattggttaaatcgtgtcacgatggctatttcgtgacacgattttagg 37104039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 12237511 - 12237580
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacc 83  Q
    ||||||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  12237511 aggatgaggttcattcgacattggttaaaatatgtcacgatggctatttcgtgacacgattttaggaacc 12237580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 5669788 - 5669848
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  5669788 atgaggtttattcgacattggttaaaacgtgtcacggtggctatttcgtgacacgatttta 5669848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 18910763 - 18910826
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  18910763 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcatgacacgattttagg 18910826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 5721819 - 5721749
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  5721819 agcacaggatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacacgattttagg 5721749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 9717103 - 9717173
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| |||||||||||  |||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  9717103 agcacaggatgaggttcgttcgacattggttaaatcgtgtcacgatggctctttcgtgacacgattttagg 9717173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 49269895 - 49269960
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacc 83  Q
    ||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  49269895 atgagattcattcgacattggttaaaacgtgtcacaatg-ctatttcgtgacacgattttaggaacc 49269960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 5680629 - 5680694
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||| ||||||||||||||||||||||||||  |  ||||||| ||||||||||||||||||    
T  5680629 atgaggttcattcgacattggttaaaacgtgtcacttttgctatttcttgacacgattttaggaac 5680694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 48014771 - 48014707
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||| | ||||||||||| |||| |||||||||||||| ||||| | | |||||||||    
T  48014771 attcgacattgatgaaaacgtgtcatgatggctatttcgtgacacaattttggaagccctaattt 48014707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 11703106 - 11703063
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  11703106 ttgaggagcaacgccgacatcgacgaaattctatcggtttattt 11703063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 37103748 - 37103680
Alignment:
Q  392 atcaacagtagcgattg-gaattaatttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||||||| ||||| | | ||||||||| | || ||||| |||||||||||||||||||||    
T  37103748 atcaacagtagcgattgagaattgact-gaggagcaaagccggcaacggcgaaactctatcggtttattt 37103680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 12782286 - 12782350
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  12782286 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 12782350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 19820111 - 19820175
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  19820111 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 19820175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 19826872 - 19826936
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  19826872 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 19826936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 6384 - 6320
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6384 attcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaaccctaattt 6320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 10600120 - 10600188
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10600120 aggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 10600188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 25873355 - 25873428
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25873355 agcacaggatgaggttcattcgacattggttaaaccgtgtcacgatggctatttcgtgacacgattttaggaac 25873428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 38006134 - 38006061
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  38006134 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgatttcaggaac 38006061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 25139881 - 25139801
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagt 96  Q
    ||||||||| ||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  25139881 gatgaggttcattagacattagttaaaacgtgtcacaatggctatttcgtgacacgattttaggaaccctaatttggaagt 25139801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 25821760 - 25821692
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25821760 aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 25821692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 36809283 - 36809210
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| |||||||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  36809283 agcacaggatgagattcattcgacattggttaaaacgtgtcacgatggctattttgtgacacgattttaggaac 36809210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 26358824 - 26358894
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  26358824 agcacaggatgaggttcattcggcattggttaaatcgtgtcacgatggctatttcgtgacacgattttagg 26358894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 29439727 - 29439797
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  29439727 agcacaggatgaagttcattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 29439797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 25869987 - 25870060
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||    
T  25869987 agcacaggatgaagttcattcgacattgattaaaacgtgtcacgatggctatttcgtgatacgattttaggaac 25870060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 16788553 - 16788609
Alignment:
Q  22 gtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttag 78  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  16788553 gtttattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttag 16788609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 30275523 - 30275467
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  30275523 attcgacattggttaaaacgtgtcacgatggttatttcgtgacacgattttaagaac 30275467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 30925920 - 30925984
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||||||||||   |||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  30925920 attcgacattgagcaaaacgtgtcacgatggctaattcgtgacacgatttcaggaaccctaattt 30925984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 1507155 - 1507112
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  1507155 ttgaggagcaacgccgacatcgacgaaactctatcggtttattt 1507112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 1503951 - 1503908
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||    
T  1503951 ttgaggagcaacgccgacatcgacgaaactctatcgatttattt 1503908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 15704492 - 15704449
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  15704492 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 15704449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 15719746 - 15719703
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  15719746 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 15719703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 460
Target Start/End: Original strand, 26365504 - 26365572
Alignment:
Q  392 atcaacagtagcgattg-gaattaatttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||||||| ||||| | | ||||||||| |  |||||||| ||||||||||||||||||||    
T  26365504 atcaacagtagcgattgagaattgact-gaggagcaaagctgacaacgatgaaactctatcggtttattt 26365572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 61756 - 61823
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacc 83  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  61756 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacc 61823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 45287978 - 45287912
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45287978 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 45287912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45291313 - 45291248
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45291313 atgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 45291248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 8276171 - 8276234
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8276171 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 8276234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 26556669 - 26556732
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  26556669 gatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcatgacacgattttagg 26556732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 10431538 - 10431608
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  10431538 agcacaggatgaggttcactcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttagg 10431608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 4542226 - 4542298
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| |||||||| || ||||||||||||||||||| ||||||||||  ||||||||||||| |||||||||||    
T  4542226 agcataggatgag-ttcattcgacattggttaaaacttgtcacgatggatatttcgtgacacaattttaggaac 4542298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 2442107 - 2442056
Alignment:
Q  28 tcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  2442107 tcgacattggctaaaacgtatcacgatggctatttcgtgacacgattttagg 2442056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 13810231 - 13810180
Alignment:
Q  40 aaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttg 91  Q
    ||||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  13810231 aaaacgtgtcacgatgactatttggttacacgatttcaggaaccctaatttg 13810180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 17730185 - 17730249
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  17730185 attcgacattggtaaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 17730249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 2793451 - 2793521
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2793451 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 2793521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 49499409 - 49499343
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49499409 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 49499343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 1951193 - 1951120
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1951193 agcataggatgaggttcattcgacagtggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 1951120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 42021881 - 42021945
Alignment:
Q  15 ggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  42021881 ggatgaggttcattcgacattggttaaaacgtgttacgatggctatttcgtgacacgattttagg 42021945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 34733111 - 34733030
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttg 91  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||| | |||||||    
T  34733111 agcacaggatgaggttcattcgacattggt-aaaatgtgtcacgatggctatttcgtgacatgattttaggaaacataatttg 34733030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 29644156 - 29644086
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| |||||||| || |||||||||||| |||||||||| |||||| ||||||||||||| |||||||||    
T  29644156 agcacaggatgagattcattcgacattggctaaaacgtgttacgatggctatttcgtgacatgattttagg 29644086  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 387
Target Start/End: Original strand, 30604682 - 30604713
Alignment:
Q  356 gagagaggggaaggcacatgaacatagaagaa 387  Q
    ||||||||||||||||||||||||||||||||    
T  30604682 gagagaggggaaggcacatgaacatagaagaa 30604713  T

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Target: scaffold0270 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 901 - 834
Alignment:
Q  15 ggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  901 ggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 834  T

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Target: scaffold0270; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 4261 - 4194
Alignment:
Q  15 ggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4261 ggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 4194  T

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Target: scaffold0270; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 11391 - 11324
Alignment:
Q  15 ggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11391 ggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 11324  T

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Target: scaffold0005 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 291115 - 291185
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  291115 agcacaggataaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtaacacgattttagg 291185  T

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Target: scaffold0015 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 197383 - 197453
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||    
T  197383 agcacaggatgaggttcattcgacattgattaaaatgtgtcacgatggctatttcatgacacgattttagg 197453  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 35039 - 34989
Alignment:
Q  40 aaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||| ||| ||| |||||||||||||||||||||| ||||||||||||||    
T  35039 aaaacatgtaacgctgactatttcgtgacacgatttcaggaaccctaattt 34989  T

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Target: scaffold0062 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 53404 - 53361
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  53404 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 53361  T

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Target: scaffold0062; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 68303 - 68260
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  68303 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 68260  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 3676 - 3624
Alignment:
Q  27 ttcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||||   |||||||||||||||||| |  ||||||||||||||||||    
T  3676 ttcgacattgaggaaaacgtgtcacgatgacaaaatcgtgacacgattttagg 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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