View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3005_high_21 (Length: 240)
Name: NF3005_high_21
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28336515 - 28336290
Alignment:
| Q |
1 |
gaactttgaaaaacccacacaagtcactcacnnnnnnnctctctaaaatctacggaccaatcatgacactaaaacttggcaacataacatccatagtaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28336515 |
gaactttgaaaaacccacacaagtcactcacaaaaaaactctctaaaatctacggaccaatcatgacactaaaacttggcaacataacatccatagtaat |
28336416 |
T |
|
| Q |
101 |
ctcatccccacaactaaccaaacaagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttagatattggcgaggttgttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28336415 |
ctcatccccacaactaaccaaacaagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttagatattggcgaggttgttta |
28336316 |
T |
|
| Q |
201 |
tagcgccaacaaaaatgtcacaagtg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28336315 |
tagcgccaacaaaaatgtcacaagtg |
28336290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 28321214 - 28321125
Alignment:
| Q |
39 |
ctctctaaaatctacggaccaatcatgacactaaaacttggcaacataacatccatagtaatctcatccccacaactaaccaaacaagtt |
128 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||||||| || | ||||||| ||||||| ||||| ||||||||| || ||||||||||| |
|
|
| T |
28321214 |
ctctcaaaaatctatggaccaatcatgacattaaaactaggaagcataacaaccatagtgatctcttccccacaagtagccaaacaagtt |
28321125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 28331693 - 28331605
Alignment:
| Q |
39 |
ctctctaaaatctacggaccaatcatgacactaaaacttggcaacat-aacatccatagtaatctcatccccacaactaaccaaacaagt |
127 |
Q |
| |
|
||||| |||| ||| ||||||||||||||| ||||||| || ||||| |||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
28331693 |
ctctcaaaaacctatggaccaatcatgacattaaaactagg-aacattaacaaccatagtaatctcatcaccacaactagccaaacaagt |
28331605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 28310640 - 28310551
Alignment:
| Q |
39 |
ctctctaaaatctacggaccaatcatgacactaaaacttggcaacat-aacatccatagtaatctcatccccacaactaaccaaacaagtt |
128 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||||| || ||||| |||| |||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
28310640 |
ctctcaaacatctatggaccaattatgacactaaaactagg-aacattaacaaccatagtaatctcatcacctcaactagccaaacaagtt |
28310551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 28297137 - 28297065
Alignment:
| Q |
54 |
ggaccaatcatgacactaaaacttggcaacataacatccatagtaatctcatccccacaactaaccaaacaag |
126 |
Q |
| |
|
||||||||||||||||||||||| || | |||||| |||||||||| ||||| |||||| || ||||||||| |
|
|
| T |
28297137 |
ggaccaatcatgacactaaaactaggaacaataacaaccatagtaatttcatctccacaagtagccaaacaag |
28297065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 28296876 - 28296801
Alignment:
| Q |
124 |
aagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttagatattggcgaggttgttt |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||||||| ||||| |||||||| |||| ||||| |
|
|
| T |
28296876 |
aagttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtttttgatattggtgaggctgttt |
28296801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 28288061 - 28288150
Alignment:
| Q |
39 |
ctctctaaaatctacggaccaatcatgacactaaaacttggcaacat-aacatccatagtaatctcatccccacaactaaccaaacaagtt |
128 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||||| || ||||| |||| |||||||||| ||||| |||||| || ||||||||||| |
|
|
| T |
28288061 |
ctctcaaacatctatggaccaattatgacactaaaactagg-aacattaacaaccatagtaatttcatcaccacaattagccaaacaagtt |
28288150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 28320938 - 28320874
Alignment:
| Q |
124 |
aagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttagatattgg |
188 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||| | |||||||||| ||||| |||||||| |
|
|
| T |
28320938 |
aagttgcaagaattattagattatgtgaatgaaaaaagtaacaaaggtgaggtttttgatattgg |
28320874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University