View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_high_23 (Length: 238)
Name: NF3005_high_23
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 8807743 - 8807848
Alignment:
| Q |
122 |
tttcatgaggacaacaacattaaacattgctagtagcagtggcagtgacagtgctagtgaaagaacttgttgagtttaggtgttaaagaaaaaacaatgc |
221 |
Q |
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| T |
8807743 |
tttcatgaggacaacaacattaaacattgctagtagcagtggcagggacagtgctagtgaaagaacttgttgagtttaggtgttaaagaaaaaacaatgc |
8807842 |
T |
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| Q |
222 |
gttcat |
227 |
Q |
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|||||| |
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| T |
8807843 |
gttcat |
8807848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 8807638 - 8807689
Alignment:
| Q |
17 |
attttttggaagcataggtggttcaactagttttgtttgcacttgttggagg |
68 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8807638 |
attttttggaagcaaaggtggttcaactagttttgtttgcacttgttggagg |
8807689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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