View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_high_9 (Length: 319)
Name: NF3005_high_9
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 40515436 - 40515707
Alignment:
| Q |
19 |
atgattgtattgtagctatgacttgaatttatattgtattgtgagacatgtctggcagtgactgttaactctaggacatgtctatcaataactattttta |
118 |
Q |
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| T |
40515436 |
atgattgtattgtagctatgacttgaatttatattgtattgtgagacatgtctggcagtgactgttaactctaggacatgtctatcaataactattttta |
40515535 |
T |
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| Q |
119 |
tgtacaattgccaattttgttgagggttgttggatggggcatgaaatagttattgcatctagcaatcacnnnnnnnnnnnnnnntcagcgtccttatctt |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40515536 |
tgtataattgccaattttgttgagggttgttggatggggcatgaaatagttattgcatctagcaatcacaaaaaggaaaaaaaatcagcgtccttatctt |
40515635 |
T |
|
| Q |
219 |
actggctgttttcaatggaccgctggtgatgaaaatattggtggtggattggaatttcttaaggttgagccgtggctatgattgtcctt |
307 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40515636 |
actg-----------------gctggtgatgaaaatattggtggtggattggaatttcttaaggttgagccgtggctatgattgtcctt |
40515707 |
T |
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