View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_1 (Length: 640)
Name: NF3005_low_1
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_1 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0820 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 90 - 631
Target Start/End: Original strand, 122691 - 123230
Alignment:
| Q |
90 |
tatagtaaaacaaagacatttaataaacttacagttgggatgaccgataagatgtccagctgagaaagagtggtataatctggcatttgggacaaaccta |
189 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
122691 |
tatagtaaaacaaagacatttgataaacttacagttgggatgaccgataagatgtccagctgagaaagagtggtataatctggcatttgggacgaaccta |
122790 |
T |
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| Q |
190 |
cctgacaaaattcaaattccaaaaatgttgtgttaacaaatattaaatacataagaatacattttatatgatgtaaaagcaaaatatataatttacctcg |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
122791 |
cctgacaaaattcaaattccaaaaatgttgtgttaacaaatattaaatatgtaagaatacattttatatgatgtaaa-gcaaaatatataatttacctcg |
122889 |
T |
|
| Q |
290 |
cctgtaccaacattctgaatagggagagcttgatccttctnnnnnnnnnttaaaagattgtcttagtaacatatttagaattggtatgttgacaaatgtt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
122890 |
cctgtaccaacattctgaatagggagagcttgatccttctaaaaaaaa-ttaaaagattgtcttagtaacatatttagaattggtatgttgacaaatgtt |
122988 |
T |
|
| Q |
390 |
tgttgcaacatagatgtatgactcattgtaaaaggaatactttccagtacctctgctatttcaacattctcaataggcacattttgatcggtctaaacat |
489 |
Q |
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| T |
122989 |
tgttgtaacatagatgtatgactcattgtaaaaggaatactttccagtacctctgctatttcaacattctcaataggcacattttgatcggtctaaacat |
123088 |
T |
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| Q |
490 |
aaagtataaacgcgtgttaataatttaaattagaattcttatattcacaaatgtttttgcaacagacatgtaagattgagatgagtttgtaacctcattt |
589 |
Q |
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| T |
123089 |
aaagtataaacgcgtgttaataatttaaattagaattcttatattcacaaatgtttttgcaacaaacatgtaagattgagatgagtttgtaacctcattt |
123188 |
T |
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| Q |
590 |
tttgggaacaattctttgatcttttctatcaaaccttcatct |
631 |
Q |
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| T |
123189 |
tttgggaacaattctttgatcttttctatcaaaccttcatct |
123230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 581 - 631
Target Start/End: Original strand, 22077956 - 22078006
Alignment:
| Q |
581 |
acctcattttttgggaacaattctttgatcttttctatcaaaccttcatct |
631 |
Q |
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| T |
22077956 |
acctcattttttgggaacaatgctttgatcttttcaattaaaccttcatct |
22078006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0820 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0820
Description:
Target: scaffold0820; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 465 - 388
Alignment:
| Q |
20 |
tgcgtccgcacgggttgcgccgttggcgcannnnnnnnctcttatgatttataatttaattcgggagatttatagtaaa |
98 |
Q |
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| T |
465 |
tgcgtccgcacgggttgcgccgttggcgcattttttttttctcatga-ttataatttaattcgggagatttataataaa |
388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 4102390 - 4102361
Alignment:
| Q |
20 |
tgcgtccgcacgggttgcgccgttggcgca |
49 |
Q |
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| T |
4102390 |
tgcgtccgcacgggttgcgccgttggcgca |
4102361 |
T |
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