View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_15 (Length: 277)
Name: NF3005_low_15
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 12164017 - 12163754
Alignment:
| Q |
7 |
cacatataagaaggatggaagccaacagcatggctaggaaaagaaaagcctttgaattcatttttataaagtactctctatgaaacttatatgtatctag |
106 |
Q |
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| T |
12164017 |
cacatataagaaggatggtagccaacagcatggctaggaaaagtaaagcctttgaattcatttttataaagtactctctatgaaacttatatgtatctag |
12163918 |
T |
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| Q |
107 |
gaaaagtattgattgatgaaaatgaagtgaccaaatgtttggtatttataggcaaggtgaggcagaaatatagaataagagcattaaattgttttgttga |
206 |
Q |
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| T |
12163917 |
gaaaagtattgattgatgaaaatgaagtgaccaaatgttgggtatttataggcaaggtgaggcagaa--atagaataatagcattaaattgttttgttca |
12163820 |
T |
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| Q |
207 |
gannnnnnnagttcattcttatctttatttctgagttactattattagtaagtagatcagcaacat |
272 |
Q |
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| T |
12163819 |
gatatttttagttcattcttatctttatttctgagttactattattagtaagtggatcagcaacat |
12163754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 12149525 - 12149445
Alignment:
| Q |
15 |
agaaggatggaagccaacagcatggctaggaaaagaaaagcctttgaattcatttttataaagtactctctatgaaactta |
95 |
Q |
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| T |
12149525 |
agaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcattttcaagaagtactcactttgaaactta |
12149445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 12146284 - 12146340
Alignment:
| Q |
15 |
agaaggatggaagccaacagcatggctaggaaaagaaaagcctttgaattcattttt |
71 |
Q |
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| T |
12146284 |
agaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcattttt |
12146340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 12175301 - 12175238
Alignment:
| Q |
113 |
tattgattgatgaaaatgaagtgaccaaatgtttggtatttataggcaaggtgaggcagaaata |
176 |
Q |
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| T |
12175301 |
tattgatcgatgaaaatgaagtgactgaaagttatgtatttataggcaagatgaggaagaaata |
12175238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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