View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_17 (Length: 266)
Name: NF3005_low_17
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 53208224 - 53207983
Alignment:
| Q |
16 |
caatgatatatttatattcgtgtcacaattgataacaagaaggaccacccaaaaactatgagtgaaacaaggtcaaggaccaccaagattataatagttg |
115 |
Q |
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| T |
53208224 |
caatgatatatttatattcgtgtcacaattgataacaagaaggaccacccaaaaactatgagtgaaacaaggtcaaggaccaccaagattataatagttg |
53208125 |
T |
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| Q |
116 |
ttggtgaacgatgataactaatagaaaattctttgttgaaaagccaacccaataatagagataattaattagtacaatatcactaatgattcccaattgt |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53208124 |
ttggtgaacgatgaccactaatagaaaattctttgttgaaaagccaacccaataatagagataattaattagtacaatatcactaatgattcccaattgt |
53208025 |
T |
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| Q |
216 |
acacatagctataaacaaacaaagtagtaattcccttcatat |
257 |
Q |
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| T |
53208024 |
acgcatagctataaacaaacaaagtagtaattcccttcatat |
53207983 |
T |
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