View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_18 (Length: 255)
Name: NF3005_low_18
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43180382 - 43180145
Alignment:
| Q |
1 |
ggctttctcgattagtgaacgctagaagaaatttgaggcgaaagactgcgattaattcaagatgccactatgccattacatcgttcccaagaattgaact |
100 |
Q |
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| T |
43180382 |
ggctttctcgattagtgaacgctagaagaaatttgaggcgaaagactgcgattaattcaagatgccactatgccattacatcgttctcaagaattgaact |
43180283 |
T |
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| Q |
101 |
taacatcatcttagctccatgctggaaggatttgattaacagaaaggcatgaatgcagaagtgtaaaatgatgcgccgaataccatatatagtggttaat |
200 |
Q |
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| T |
43180282 |
taacatcatcttagctccatggtggaaggatttgattaacagaaaggcatgaatgcagaagtgtgaaatgatgcgccgaataccatatatagtggt---- |
43180187 |
T |
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| Q |
201 |
taataaaatgaatttagttcattggttgtaaaagggaaaata |
242 |
Q |
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| T |
43180186 |
taataaaatgaatttagttcattggttgtaaaagggaaaata |
43180145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 43063762 - 43063939
Alignment:
| Q |
12 |
ttagtgaacgctagaagaaatttgaggcgaaagactgcgattaattcaagatgccactatgccattacatcgttcccaagaattgaacttaacatcatct |
111 |
Q |
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| T |
43063762 |
ttagtcaaccctagaagcaatttgagatggaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaacttaacatcatct |
43063861 |
T |
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| Q |
112 |
tagctccatgctggaaggatttgattaacagaaaggcatgaatgcagaagtgtaaaatgatgcgccgaataccatata |
189 |
Q |
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| T |
43063862 |
tagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatata |
43063939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 43182506 - 43182427
Alignment:
| Q |
76 |
ttacatcgttcccaagaattgaacttaacatcatcttagctccatgctggaaggatttgattaacagaaaggcatgaatg |
155 |
Q |
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| T |
43182506 |
ttacatcgttcccataaatcgaacttaacatcatcttagttacatggttgaaggatttgattaacaaaaaggcttgaatg |
43182427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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