View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_19 (Length: 254)
Name: NF3005_low_19
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 39197297 - 39197066
Alignment:
| Q |
16 |
atgaacattgggtcctatagtagtattacaaatgtcaatgaaaaagggtacatagcgcacaatattttgtggcatgtcaaaatcaatatcatgtcatctt |
115 |
Q |
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| T |
39197297 |
atgaacattgggtcctatagtagtattacaaatgtcaatgaaaaagggtacatagcgcacaatattttgtgacatgtcaaaatcaatatcatgtcatctt |
39197198 |
T |
|
| Q |
116 |
caagatgagttataggtaaacatcaagcgtctcggtgagcttaactcacttgataagagataatatatatattttatacg-gggtcagagttcgaactcc |
214 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| |
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| T |
39197197 |
caagatgagttataggtaaacatcaaacgtctccgtgagcttaactcacttgataagagataatat--atattttatatgaaggtcagagttcgaactcc |
39197100 |
T |
|
| Q |
215 |
ggacacttcacttattcaccaccaataaatcttt |
248 |
Q |
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|||||||||||||||||||| ||||| ||||||| |
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| T |
39197099 |
ggacacttcacttattcacctccaatgaatcttt |
39197066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 39225875 - 39225779
Alignment:
| Q |
47 |
atgtcaatgaaaaagggtacatagcgcacaatattttgtggcatgtcaaaatcaatatcatgtcatcttcaagatgagttataggtaaacatcaagc |
143 |
Q |
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|||||| |||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||| |
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| T |
39225875 |
atgtcactgaaaaagggaacatagcacacaccattttgtgccatgtcaaaatcaatatcatgtcatcttcaagataagttaaatgtaaacaccaagc |
39225779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 19608656 - 19608695
Alignment:
| Q |
195 |
ggggtcagagttcgaactccggacacttcacttattcacc |
234 |
Q |
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| T |
19608656 |
ggggtcggggttcgaactccggacacttcacttattcacc |
19608695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 30733165 - 30733201
Alignment:
| Q |
197 |
ggtcagagttcgaactccggacacttcacttattcac |
233 |
Q |
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|||||| |||||||||||||||||| ||||||||||| |
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| T |
30733165 |
ggtcagggttcgaactccggacactccacttattcac |
30733201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 10207690 - 10207727
Alignment:
| Q |
197 |
ggtcagagttcgaactccggacacttcacttattcacc |
234 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| |
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| T |
10207690 |
ggtcggagtttgaactccggacacttcacttattcacc |
10207727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 54457153 - 54457181
Alignment:
| Q |
151 |
tgagcttaactcacttgataagagataat |
179 |
Q |
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| T |
54457153 |
tgagcttaactcacttgataagagataat |
54457181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 24636774 - 24636806
Alignment:
| Q |
202 |
gagttcgaactccggacacttcacttattcacc |
234 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
24636774 |
gagttcgaactccggacacctcacttattcacc |
24636806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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