View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3005_low_21 (Length: 242)
Name: NF3005_low_21
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3737115 - 3737342
Alignment:
| Q |
1 |
atgtataatttgctagcagaagaaatcatgatttctaaatccaaataatgttccataaagaagtgaccaacacaatgtttgtgtctatatgtatatattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3737115 |
atgtataatttgctagcagaagaaatcatgatttctaaatccaaataatgttctataaagaagtgaccaacacaatgtttgtgtctatatgtatatattg |
3737214 |
T |
|
| Q |
101 |
aaaccagtataagtagatatgacaaaactagtttaaattttttgaaatgacctgcccatatagtctctctaggggccaagatgtgacaacgcttattggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3737215 |
aaaccagtataagtagatatgacaaaactagtttaacatttttgaaatgacctgcccatatagtctctctaggagccaagatgtgacaacgcttattggt |
3737314 |
T |
|
| Q |
201 |
ctaaaaatcaaaattttaatttattatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3737315 |
ctaaaaatcaaaattttaatttattatt |
3737342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 3740509 - 3740661
Alignment:
| Q |
22 |
gaaatcatgatttctaaatccaaataatgttccataaagaa---gtgaccaacacaatgtttgtgtctatatgtatatattgaaaccagtataagtagat |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| || || ||||| || || | |||||| ||||||||||||||||||||||||| ||| | |||| ||||| |
|
|
| T |
3740509 |
gaaatcatgatttctaaatctaaatattggtctataaaaaaaatgttagcaacactatgtttgtgtctatatgtatatattagaactaatataggtagac |
3740608 |
T |
|
| Q |
119 |
atgacaaaactagtttaaattttttgaaatgacctgcccatatagtctctcta |
171 |
Q |
| |
|
|||||||||| |||| || ||||| |||||| || | |||||||||||||| |
|
|
| T |
3740609 |
atgacaaaacaagttgaatatttttaaaatgatatgtcgatatagtctctcta |
3740661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 3729435 - 3729579
Alignment:
| Q |
84 |
tctatatgtatatattgaaaccagtataagtagatatgacaaaactagtttaaattttttgaaatgacctgcccatatagtctctctaggggccaagatg |
183 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||| |||||||||| |||| || | ||||||||| |||||||||||||||| || ||||| ||| |
|
|
| T |
3729435 |
tctatatgtatatattggaacttatataggtagacatgacaaaacaagttgaatatatttgaaatggtatgcccatatagtctcttcagaagccaacatg |
3729534 |
T |
|
| Q |
184 |
tgacaacgcttattggtctaaaaatcaaaattttaatttattatt |
228 |
Q |
| |
|
||||| | |||| | || |||||||||||||||||||| |||| |
|
|
| T |
3729535 |
tgacagagtttatggagctgaaaatcaaaattttaatttactatt |
3729579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University