View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3005_low_24 (Length: 239)
Name: NF3005_low_24
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_24 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16698319 - 16698099
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16698319 |
catgatcctatttacaggagaagcaagcaaaagttgccttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
16698220 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgctattgtcatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
16698219 |
gcatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatatgtacatcatgcaccttgctactgtcatca |
16698120 |
T |
|
| Q |
201 |
caaatgtttattggccatgtg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
16698119 |
caaatgtttattggccatgtg |
16698099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 39298617 - 39298438
Alignment:
| Q |
8 |
ctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatacatgca |
107 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||| |
|
|
| T |
39298617 |
ctatttataggagaagcaagccaaagttcatttacatgcatgaagacacttgtcatttgcttttcatgcaaaacaccaagtgtcccttgcaaaacatgca |
39298518 |
T |
|
| Q |
108 |
ccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcacctt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||| || |||||||||| ||||||||| |||||||||| |
|
|
| T |
39298517 |
tcacaccatgtgtctcttgcaatgcatgcatcacaacatatgttactcgtacactacactatgtgtacaccatgcacctt |
39298438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 54980219 - 54980414
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
54980219 |
catggtcctatttataggaggagcaagccaaagttgccttacatgcatgaagacacttgtcatttgcctttcatgcaaaacaccaagtgtcccttgcaat |
54980318 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatc |
199 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||| ||||||| ||||||||||||||||||||||| |||||| | ||||| |||||||| |
|
|
| T |
54980319 |
gcatgcaccacaccaagtgtctct-------catgcattacaccatgtgttactcatacactacaccatgtgtacaccatgcatcctgctacttgtcatc |
54980411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 54967587 - 54967762
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
54967587 |
catggtcctatttataggaggagcaagccaaagttgccttacatgcatgaagacacttgtcatttgcctttcatgcaaaacaccaagtgtcccttgcaat |
54967686 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgca |
183 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||| ||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
54967687 |
gcatgcaccacaccaagtgtctct-------catgcattacaccatgtgttactcatacactacaccatgtgtacaccatgca |
54967762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 17645593 - 17645461
Alignment:
| Q |
34 |
ttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatacatgcaccacaccatgtgtctcttgcaatgca |
133 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
17645593 |
ttgccttacatgcatgaacacacttgtcatttgcctttcatgcaaaacaccaagtgtcccttccaatgaatgcaccgcaccatgtgtctcttgcaatgca |
17645494 |
T |
|
| Q |
134 |
tgcaccacaacatgtgtctgtcatacactacac |
166 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |
|
|
| T |
17645493 |
tgcaccacaacatatgttactcatacactacac |
17645461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 44782899 - 44783082
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
44782899 |
catggtcctatttataggagaagcaagccaaagttgccttacatgcatgaagacatttgtcatttgccttttatgcaaaacaccaagtgtcccttgcaat |
44782998 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta |
191 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||| ||||||| ||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
44782999 |
gcatgcaccacaccaaatgtctct-------catgcattacaccatgtgttactcatacactacaccatgtgtacaccatgcatcttgcta |
44783082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 27341322 - 27341504
Alignment:
| Q |
17 |
ggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatacatgcaccacaccat |
116 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| ||||| |||| |||||||| |||||| |||||| ||| ||||||||||||||| |
|
|
| T |
27341322 |
ggagaagcaagtcaaagttgccttacatgcatgaagacacttgccattttcctttcaagcaaaacaccaagtgccccttgtaatgcatgcaccacaccat |
27341421 |
T |
|
| Q |
117 |
gtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
27341422 |
gtgtctcttgcaatgcatgcaccacaacatg-gtaactcatatactacaccatgtgtacaccatgccccttgctacttgtcatc |
27341504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 38994432 - 38994600
Alignment:
| Q |
17 |
ggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatacatgcaccacaccat |
116 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||| |||||||||||| |||| |||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
38994432 |
ggagaagcaagccaaagttgtcttacgtgcatgaagaaacttgtcatttgcatttcatgcaaaacatcaagtgtcccatgcaatgcatgcaccacaccat |
38994531 |
T |
|
| Q |
117 |
gtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcacc |
185 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
38994532 |
gtgtcttttgtaatatatgcaccacaacatgtgttactcatacactacatcatgtgtacactatgcacc |
38994600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 13466002 - 13466188
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
13466002 |
catggtcctatttataggagaaacaagccaaagttatcttacatgcatgaagacacttgtcatttgtctttcatgcaaaacacttagtgtcccttgcaat |
13466101 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcacctt |
187 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | ||||||||||||||| ||||||| |||||||| |||||| ||| |||||| |
|
|
| T |
13466102 |
gcatgcaccacaccatgtgtcacttgcaatgcgtacaccacaacatgtgttactcatacattacaccatatgtacaccatacacctt |
13466188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 4843026 - 4843209
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| || |
|
|
| T |
4843026 |
catggtcctatttataggagaagcaagtcaaagttgccttacatgcatgaagacacttgtcatttgcctttcatgcaaaacaccaagtgtcccttgctat |
4843125 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta |
191 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4843126 |
gcatgcaccacaccaagtgtctct-------catgcattacaccatgtgttactcatacactacaccatgtgtacacaatgcaccttgcta |
4843209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25857505 - 25857705
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||||| |||| ||| ||||| ||||||||||||||||| |
|
|
| T |
25857505 |
catggtcctatttataggagaagcaagccaaagttgccttacatgcatgaagacatttgtcatttgcctttcatgc-aaacaccaagtgtcccttgcaat |
25857603 |
T |
|
| Q |
101 |
acat----gcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgt |
195 |
Q |
| |
|
||| ||||||||||| |||| || |||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
25857604 |
gcatgcacgcaccacaccaaatgtccct-----tgcatgcaccacaacacatgtcactcatacactacaccatgtgtacaccatgcatcttgctacttgt |
25857698 |
T |
|
| Q |
196 |
catcaca |
202 |
Q |
| |
|
||||||| |
|
|
| T |
25857699 |
catcaca |
25857705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 17845696 - 17845514
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| ||| ||||||| |||| ||| |||||| ||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||| |
|
|
| T |
17845696 |
catggtcctatttataggacaagcaagttaaagatgccttacatacatgaagacacttgtcatttgcctttcatgcaaaacaccaaatgtcccttgcaat |
17845597 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcacctt |
187 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||| ||||||||||| |||||||| | |||||||||||| |||||||||| |
|
|
| T |
17845596 |
gcatgcaccacaccacatgtctcttgca----aagcactacaacatgtgttactcatacaccataccatgtgtacaccatgcacctt |
17845514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 4603500 - 4603333
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||||||||||||| |||||||||| | |||||| | ||||||||| ||||||| |||||||||| |||| |||| |||| ||||||||||||||||| |
|
|
| T |
4603500 |
catgatcctatttataggagaagcaaaccaaagtttccttacatgcacgaagacatttgtcatttgcctttcatgcacaacaccaagtgtcccttgcaat |
4603401 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgt |
173 |
Q |
| |
|
||||||| |||||| ||||| || ||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
4603400 |
gcatgcacaacaccaagtgtccct-----tgcatgcaccaacacatgtgtcactcatacactacaccatgtgt |
4603333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 24379712 - 24379823
Alignment:
| Q |
74 |
tgcaaaacatcaagtgtcccttgcaatacatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgt |
173 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
24379712 |
tgcaaaacaccaagtgtcccttgcaatgcatgcaccacacaaagtgtctcttgca-----tgcaccacaacatatgtcactcatacactacaccatgtgt |
24379806 |
T |
|
| Q |
174 |
acatcatgcaccttgct |
190 |
Q |
| |
|
||| |||||| |||||| |
|
|
| T |
24379807 |
acaccatgcatcttgct |
24379823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4835951 - 4836041
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtc |
91 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
4835951 |
catggtcctatttataggagaagcaagccaaagttgccttacatgcatgaagacacttgtcatttgcctttcatgcaaaacaccaagtgtc |
4836041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 38994594 - 38994664
Alignment:
| Q |
133 |
atgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
38994594 |
atgcaccacaacatgtgttactcatacactacttcatgtgtacttcatgcaccttgctacttgtcatcaca |
38994664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 4836067 - 4836116
Alignment:
| Q |
154 |
tcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4836067 |
tcatacactacaccatgtgtacaccatgcaccttgctacttgtcatcaca |
4836116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2560 - 2365
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||| |
|
|
| T |
2560 |
catggtcctatttataggaggagcaagccaaagttgccttacatgcatgaagacacttgtcatttgcctttcatgcaagacaccaagtgtcccttgcaat |
2461 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatc |
199 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||| ||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
2460 |
gcatgcaccacaccaagtgtctct-------catgcattacaccatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatc |
2368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 18966061 - 18965880
Alignment:
| Q |
17 |
ggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatacatgcaccacaccat |
116 |
Q |
| |
|
||||||| |||| |||| ||| ||||||||||||||||| ||||||||| |||| |||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
18966061 |
ggagaaggaagccaaagctgccttacatgcatgaagacatttgtcattttcctttcatgcaaatcaccaactgtcccttgcaatgcatgcaccacaccaa |
18965962 |
T |
|
| Q |
117 |
gtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca |
202 |
Q |
| |
|
||||| || ||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
18965961 |
gtgtccct-----tgcatgcaccaaaacatgtgtcactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcaca |
18965880 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 36167439 - 36167245
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||| ||||||||||||||||| |||| |||| |||| ||| ||||| ||||||||||||||| | |
|
|
| T |
36167439 |
catggtcctatttataggagaagcaagccaaagttgccttacatgcatgaagacatttgttattttcctttcatgc-aaacaccaagtgtcccttgcatt |
36167341 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatc |
199 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
36167340 |
gcatgcaccacaccaagtgtctct-------catgcattacaacatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatc |
36167248 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41481440 - 41481246
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||| ||||||||||||||||| |||| |||| |||| ||| ||||| ||||||||| ||||||| |
|
|
| T |
41481440 |
catggtcctatttataggagaagcaagccaaagttgccttacatgcatgaagacatttgtaatttacctttcatgc-aaacaccaagtgtccattgcaat |
41481342 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatc |
199 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
41481341 |
gcatgcaccacaccaagtgtctct-------catgcattacaacatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatc |
41481249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 18951513 - 18951682
Alignment:
| Q |
17 |
ggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatacatgcaccacaccat |
116 |
Q |
| |
|
|||||| ||||| |||| ||| |||||||||||| ||||||||||||| |||| |||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
18951513 |
ggagaaacaagccaaagctgccttacatgcatgagaacacttgtcattttcctttcatgcaaatcaccaattgtcccttgcaatgcatgcaccacaccaa |
18951612 |
T |
|
| Q |
117 |
gtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta |
191 |
Q |
| |
|
||||| || | |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
18951613 |
gtgtccct-----tacatgcaccacaacatgtgtcactcatacactacaccatgtgtacaccatgcatcttgcta |
18951682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 26799 - 26980
Alignment:
| Q |
22 |
agcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatacatgcaccacaccatgtgtc |
121 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||| |||| |||| ||||||||| |||||||| |||||| |||||||||||||||||| || |
|
|
| T |
26799 |
agcaagccaaagttgcctcacatgcatgaagacacttgttattttcctttcatgcaaaacaccaagtgtcagttgcaacacatgcaccacaccatgtatc |
26898 |
T |
|
| Q |
122 |
tcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca |
202 |
Q |
| |
|
||||||||| |||||| || |||| |||| ||||||||||||| || |||||| ||| |||||||||| ||||||||||| |
|
|
| T |
26899 |
tcttgcaatacatgcatcataacacgtgttactcatacactacactatttgtacaccatacaccttgctacttgtcatcaca |
26980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 42683208 - 42683409
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |||| | ||||||| |||||||| ||||||| |
|
|
| T |
42683208 |
catggtcctatttataggagaagcaagtcaaagttgtcttacatgcatgaagacacttgtcatttgtctttcatacaaaacacgaagtgtcc-ttgcaat |
42683306 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatc |
199 |
Q |
| |
|
|||||| ||||||| | |||||||| |||| |||||||| |||||||| ||||| |||||| |||||||||| ||||||||||| || |||||||| |
|
|
| T |
42683307 |
gcatgcaacacaccacgcgtctcttgtaatgtatgcaccatgacatgtgttactcatatactacatcatgtgtacaccatgcaccttgttacttgtcatc |
42683406 |
T |
|
| Q |
200 |
aca |
202 |
Q |
| |
|
||| |
|
|
| T |
42683407 |
aca |
42683409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 37287260 - 37287379
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||| |
|
|
| T |
37287260 |
catggtcctatttataggagaagcaagccaaagttgtcttacatgcatgaagacacttgtcatttgcctttcatgcaaaacactaagtgtcccttgaaat |
37287359 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgt |
120 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
37287360 |
gcatgcaccacaacatgtgt |
37287379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 9757579 - 9757706
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| ||||||| ||| |||||||| | ||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
9757579 |
catggtcctatttataagagaagccagccaaagttgcctcacatgcatgaagacatttgtcatttgcctttcatgcaaaacaccaagtgtcccttgcaat |
9757678 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgtctcttgca |
128 |
Q |
| |
|
|||||||||||||| | ||| |||||| |
|
|
| T |
9757679 |
gcatgcaccacaccaagggtcccttgca |
9757706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 3346460 - 3346375
Alignment:
| Q |
117 |
gtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcacaa |
203 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
3346460 |
gtgtcccttgcaat--atgcaccacaacatgtgtcactcatacactacaccatatgtacatcatgcaccttgctatttgtcatcacaa |
3346375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 3346541 - 3346428
Alignment:
| Q |
6 |
tcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatacatg |
105 |
Q |
| |
|
||||||||| ||||||| ||| ||||||| |||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||| ||| |
|
|
| T |
3346541 |
tcctatttataggagaagtaagttaaagttgtcttacatgcataaagacacttgtcatttgactttcatgtaaaacatcaagtgtcccttgcaat--atg |
3346444 |
T |
|
| Q |
106 |
caccacaccatgtgtc |
121 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
3346443 |
caccacaacatgtgtc |
3346428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 37287346 - 37287416
Alignment:
| Q |
117 |
gtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcacctt |
187 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
37287346 |
gtgtcccttgaaatgcatgcaccacaacatgtgttactcatacactacaccatgtgtacactatgcacctt |
37287416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 342592 - 342792
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| |||| ||| ||||| ||||||||||||||||| |
|
|
| T |
342592 |
catggtcctatttataggagaagcaagccaaagttgacttacatgcatgaagacatttgtcatttgcctttcatgc-aaacaccaagtgtcccttgcaat |
342690 |
T |
|
| Q |
101 |
acat----gcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgt |
195 |
Q |
| |
|
||| ||||||||||| |||| || |||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
342691 |
gcatgcacgcaccacaccaaatgtccct-----tgcatgcaccacaacaaatgtcactcatacactacaccatgtgtacaccatgcatcttgctacttgt |
342785 |
T |
|
| Q |
196 |
catcaca |
202 |
Q |
| |
|
||||||| |
|
|
| T |
342786 |
catcaca |
342792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 37037754 - 37037635
Alignment:
| Q |
1 |
catgatcctatttaccggagaagcaagcaaaagttgctttacatgcatgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaat |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||| |||| |
|
|
| T |
37037754 |
catggtcctatttataggagaagcaagacaaagttgtcttacatgcatgaaaacacttgtcatttgtctttcatgcaaaacaccaagtgtcccttccaat |
37037655 |
T |
|
| Q |
101 |
acatgcaccacaccatgtgt |
120 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
37037654 |
gcatgcaccacaacatgtgt |
37037635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 37037675 - 37037582
Alignment:
| Q |
110 |
acaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca |
202 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
37037675 |
acaccaagtgtcccttccaatgcatgcaccacaacatgtgttgctcatacactacaccatgtgtacaccatgcaccttactacttgtcatcaca |
37037582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 27641491 - 27641373
Alignment:
| Q |
85 |
aagtgtcccttgcaatacatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcac |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||| ||||||||| |||||||| |||| || || | | ||||||| |
|
|
| T |
27641491 |
aagtgtcccttgcaatacatgcaccacaccacgtgtttcttggattgcatgcaccataacatgtgttactcatacacaacactatctgcataccatgcac |
27641392 |
T |
|
| Q |
185 |
cttgcta-ttgtcatcaca |
202 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
27641391 |
attgctacttgtcatcaca |
27641373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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