View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_26 (Length: 237)
Name: NF3005_low_26
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39197042 - 39196822
Alignment:
| Q |
1 |
aaaaaaggtaaacaccaagcgaagtcaaaaagaaagaagagccaaacaaatgtgacggattccttatttgttttctattagttaggtcatgcaaaatgga |
100 |
Q |
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| T |
39197042 |
aaaaaaggtaaacaacaagcgaagtcaaaaagaaagaagagccaaacagatgtgacggattccttatttgttttctattagttaggtcatgcaaaatgga |
39196943 |
T |
|
| Q |
101 |
caacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaaaagctcataaggaaaagctagcaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39196942 |
caacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaaaagctcataaggaaaagctagcaacct |
39196843 |
T |
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| Q |
201 |
tgcatgattccaacataaaag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39196842 |
tgcatgattccaacataaaag |
39196822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 39218538 - 39218394
Alignment:
| Q |
74 |
tctattagttaggtcatgcaaaatggacaacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaa |
173 |
Q |
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|||||||||||||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||| ||| ||| ||||||||||||||| |||||| |
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| T |
39218538 |
tctattagttaggtcatgcaaaatggacaatgtataattttagttag---gtaaaagacaaacttctaagatcaaattgcccgtccttaaatataccaaa |
39218442 |
T |
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| Q |
174 |
aagctcataaggaaaagctagcaaccttgcatgattccaacataaaag |
221 |
Q |
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||||||||||| | ||||||||| |||||||||||||||| ||||||| |
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| T |
39218441 |
aagctcataagaataagctagcagccttgcatgattccaagataaaag |
39218394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 39225636 - 39225492
Alignment:
| Q |
74 |
tctattagttaggtcatgcaaaatggacaacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaa |
173 |
Q |
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|||||||||||||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||| ||| ||| ||||||||||||||| |||||| |
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| T |
39225636 |
tctattagttaggtcatgcaaaatggacaatgtataattttagttag---gtaaaagacaaacttctaagatcaaattgcccgtccttaaatataccaaa |
39225540 |
T |
|
| Q |
174 |
aagctcataaggaaaagctagcaaccttgcatgattccaacataaaag |
221 |
Q |
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||||||||||| | ||||||||| |||||||||||||||| ||||||| |
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| T |
39225539 |
aagctcataagaataagctagcagccttgcatgattccaagataaaag |
39225492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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