View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3005_low_3 (Length: 475)

Name: NF3005_low_3
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3005_low_3
NF3005_low_3
[»] chr6 (11 HSPs)
chr6 (9-258)||(5738789-5739037)
chr6 (147-258)||(1126444-1126556)
chr6 (17-82)||(9953196-9953261)
chr6 (9-79)||(2371565-2371635)
chr6 (16-82)||(23379588-23379654)
chr6 (16-82)||(23388927-23388993)
chr6 (9-79)||(34501566-34501636)
chr6 (417-460)||(23388564-23388607)
chr6 (417-460)||(9953583-9953626)
chr6 (417-459)||(13096113-13096155)
chr6 (26-90)||(28665939-28666003)
[»] chr3 (25 HSPs)
chr3 (16-258)||(55032537-55032778)
chr3 (148-258)||(55035532-55035642)
chr3 (16-101)||(6445417-6445502)
chr3 (9-82)||(17532492-17532565)
chr3 (22-101)||(9392053-9392132)
chr3 (16-96)||(28265160-28265240)
chr3 (14-82)||(35411834-35411902)
chr3 (14-82)||(53815129-53815197)
chr3 (16-82)||(23299328-23299394)
chr3 (16-81)||(52198464-52198529)
chr3 (16-82)||(6922049-6922115)
chr3 (9-79)||(16185434-16185504)
chr3 (9-79)||(18645519-18645589)
chr3 (9-77)||(54736631-54736699)
chr3 (17-79)||(538175-538237)
chr3 (9-79)||(10884170-10884240)
chr3 (33-82)||(54460552-54460601)
chr3 (26-77)||(8462338-8462389)
chr3 (417-460)||(42354887-42354930)
chr3 (17-79)||(10107405-10107467)
chr3 (261-304)||(55032462-55032506)
chr3 (417-460)||(538582-538625)
chr3 (26-89)||(17537515-17537578)
chr3 (26-90)||(10880946-10881010)
chr3 (26-90)||(31548721-31548785)
[»] chr8 (18 HSPs)
chr8 (9-258)||(5540587-5540843)
chr8 (26-159)||(23612748-23612880)
chr8 (16-101)||(17895273-17895358)
chr8 (16-82)||(25595459-25595525)
chr8 (17-82)||(33878013-33878078)
chr8 (16-82)||(25592274-25592340)
chr8 (17-96)||(10663171-10663250)
chr8 (16-82)||(18722085-18722151)
chr8 (14-79)||(43682575-43682640)
chr8 (9-82)||(45156693-45156766)
chr8 (14-78)||(20520109-20520173)
chr8 (16-79)||(25228171-25228234)
chr8 (417-460)||(18721746-18721789)
chr8 (417-460)||(25595122-25595165)
chr8 (422-460)||(23613157-23613195)
chr8 (422-460)||(25591938-25591976)
chr8 (417-460)||(18696405-18696448)
chr8 (33-82)||(30640685-30640734)
[»] scaffold0080 (2 HSPs)
scaffold0080 (320-460)||(26706-26846)
scaffold0080 (9-79)||(26397-26467)
[»] chr5 (16 HSPs)
chr5 (311-460)||(39191934-39192083)
chr5 (16-131)||(22937785-22937896)
chr5 (9-81)||(21336497-21336569)
chr5 (14-78)||(28788179-28788243)
chr5 (14-81)||(21827796-21827863)
chr5 (9-79)||(32837235-32837305)
chr5 (9-82)||(37214918-37214991)
chr5 (26-90)||(40916654-40916718)
chr5 (26-81)||(21333481-21333536)
chr5 (14-82)||(39191488-39191556)
chr5 (9-74)||(14376638-14376702)
chr5 (16-79)||(42061645-42061708)
chr5 (9-79)||(43490945-43491015)
chr5 (16-77)||(31863031-31863092)
chr5 (9-77)||(28441961-28442029)
chr5 (26-90)||(7270399-7270463)
[»] chr4 (23 HSPs)
chr4 (9-101)||(19861043-19861135)
chr4 (18-90)||(33410729-33410801)
chr4 (11-82)||(3798571-3798642)
chr4 (16-131)||(40617542-40617653)
chr4 (26-90)||(27013399-27013463)
chr4 (9-82)||(15431316-15431389)
chr4 (9-82)||(15437930-15438003)
chr4 (9-90)||(19865410-19865491)
chr4 (9-94)||(53093873-53093957)
chr4 (9-79)||(37104039-37104109)
chr4 (14-83)||(12237511-12237580)
chr4 (17-77)||(5669788-5669848)
chr4 (16-79)||(18910763-18910826)
chr4 (9-79)||(5721749-5721819)
chr4 (9-79)||(9717103-9717173)
chr4 (17-83)||(49269895-49269960)
chr4 (17-82)||(5680629-5680694)
chr4 (26-90)||(48014707-48014771)
chr4 (417-460)||(11703063-11703106)
chr4 (392-460)||(37103680-37103748)
chr4 (26-90)||(12782286-12782350)
chr4 (26-90)||(19820111-19820175)
chr4 (26-90)||(19826872-19826936)
[»] scaffold0381 (1 HSPs)
scaffold0381 (26-90)||(6320-6384)
[»] chr2 (17 HSPs)
chr2 (14-82)||(10600120-10600188)
chr2 (9-82)||(25873355-25873428)
chr2 (9-82)||(38006061-38006134)
chr2 (16-96)||(25139801-25139881)
chr2 (14-82)||(25821692-25821760)
chr2 (9-82)||(36809210-36809283)
chr2 (9-79)||(26358824-26358894)
chr2 (9-79)||(29439727-29439797)
chr2 (9-82)||(25869987-25870060)
chr2 (22-78)||(16788553-16788609)
chr2 (26-82)||(30275467-30275523)
chr2 (26-90)||(30925920-30925984)
chr2 (417-460)||(1507112-1507155)
chr2 (417-460)||(1503908-1503951)
chr2 (417-460)||(15704449-15704492)
chr2 (417-460)||(15719703-15719746)
chr2 (392-460)||(26365504-26365572)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-83)||(61756-61823)
[»] chr7 (9 HSPs)
chr7 (16-82)||(45287912-45287978)
chr7 (17-82)||(45291248-45291313)
chr7 (16-79)||(8276171-8276234)
chr7 (16-79)||(26556669-26556732)
chr7 (9-79)||(10431538-10431608)
chr7 (9-82)||(4542226-4542298)
chr7 (28-79)||(2442056-2442107)
chr7 (40-91)||(13810180-13810231)
chr7 (26-90)||(17730185-17730249)
[»] chr1 (7 HSPs)
chr1 (9-79)||(2793451-2793521)
chr1 (16-82)||(49499343-49499409)
chr1 (9-82)||(1951120-1951193)
chr1 (15-79)||(42021881-42021945)
chr1 (9-91)||(34733030-34733111)
chr1 (9-79)||(29644086-29644156)
chr1 (356-387)||(30604682-30604713)
[»] scaffold0270 (3 HSPs)
scaffold0270 (15-82)||(834-901)
scaffold0270 (15-82)||(4194-4261)
scaffold0270 (15-82)||(11324-11391)
[»] scaffold0005 (1 HSPs)
scaffold0005 (9-79)||(291115-291185)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-79)||(197383-197453)
[»] scaffold0009 (1 HSPs)
scaffold0009 (40-90)||(34989-35039)
[»] scaffold0062 (2 HSPs)
scaffold0062 (417-460)||(53361-53404)
scaffold0062 (417-460)||(68260-68303)
[»] scaffold0321 (1 HSPs)
scaffold0321 (27-79)||(3624-3676)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 5739037 - 5738789
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattt 108  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  5739037 agcaaaggatgaggttcattcgacattggttaaaacgcgtcacgatggctatttcgtgacacgattttaggaaccctaatttgaaagtatttattt--tt 5738940  T
Q  109 tggtattgtgaattaaacaaaaggaaaatagaccacaagaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgc 208  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5738939 tggtagtgtgaattaaacaaaaggaaaatagaccacatgaagtagtatgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgc 5738840  T
Q  209 taaatggatcaatgagaaggactaaggaattga-ccgtaaataacatgctt 258  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  5738839 taaatggatcaatgagaaggattaaggagttgacccgtaaataacatgctt 5738789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 1126556 - 1126444
Alignment:
Q  147 gaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatggatcaatgagaaggactaaggaattga-ccgt 245  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  1126556 gaagtagtatgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatggatcaatgagaaggattaaggagttgacccgt 1126457  T
Q  246 aaataacatgctt 258  Q
    |||||||||||||    
T  1126456 aaataacatgctt 1126444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 9953196 - 9953261
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  9953196 atgaggttcattcgacattggttaaaacgtgtcacgatagctatttcgtgacacgattttaggaac 9953261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 2371565 - 2371635
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  2371565 agcacaggacgaggttcattcgacattggttaaaacgtgtcatgatggctatttcgtgacacgattttagg 2371635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 23379654 - 23379588
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| | ||||||||| |||||||||||||||||  |||||||||||||||||| |||||||    
T  23379654 gatgaggttcactcgacattgattaaaacgtgtcacgatagctatttcgtgacacgattctaggaac 23379588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 23388993 - 23388927
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| | ||||||||| |||||||||||||||||  |||||||||||||||||| |||||||    
T  23388993 gatgaggttcactcgacattgattaaaacgtgtcacgatagctatttcgtgacacgattctaggaac 23388927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 34501566 - 34501636
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| |||||||||| | ||||||||||||||||| ||||||| |||||| ||||||||    
T  34501566 agcataggatgaggttcattcgacattagctaaaacgtgtcacgatggctatttcatgacacaattttagg 34501636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 23388607 - 23388564
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  23388607 ttgaggagcaacgccgacaacgacgaaactctatcggtttattt 23388564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 9953583 - 9953626
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  9953583 ttgaggagcaacgccgacaacgacgaaactctatcggcttattt 9953626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 13096155 - 13096113
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttatt 459  Q
    |||| |||||||  |||||||||||||||||||||||||||||    
T  13096155 ttgaagagcaacaccgacaacgacgaaactctatcggtttatt 13096113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 28666003 - 28665939
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  28666003 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 28665939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 55032778 - 55032537
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattttggtatt 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |    
T  55032778 gatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctgatttgaaagtattttttt-ttttggtagt 55032680  T
Q  116 gtgaattaaacaaaaggaaaatagaccacaagaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatgg 215  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55032679 gtgaattaatcaaaaggaaaatagaccataggaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatgg 55032580  T
Q  216 atcaatgagaaggactaaggaattgaccgtaaataacatgctt 258  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  55032579 atcaatgagaaggattaaggagttgaccgtaaataacatgctt 55032537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 55035642 - 55035532
Alignment:
Q  148 aagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatggatcaatgagaaggactaaggaattgaccgtaa 247  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  55035642 aagtagtttgggagcgctggaatcaaaagaagattgggctttaaaccaagcattgatgtgctaaatggatcaatgagaaggattaaggagttgaccgtaa 55035543  T
Q  248 ataacatgctt 258  Q
    |||||||||||    
T  55035542 ataacatgctt 55035532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 6445502 - 6445417
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtattta 101  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||    
T  6445502 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaactctaatttgtaagtgttta 6445417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 17532565 - 17532492
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17532565 agcacaggatgaggttcattcgatattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 17532492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 9392053 - 9392132
Alignment:
Q  22 gtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtattta 101  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||    
T  9392053 gtttattcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttaagaatcctaatttgaaagtgttta 9392132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 28265160 - 28265240
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagt 96  Q
    ||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||    
T  28265160 gatgaagttcattcgacattggttaaaacgtgtcacggtggctatttcgtgacacgattttaggaactctaatttgtaagt 28265240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 35411834 - 35411902
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  35411834 aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 35411902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 53815129 - 53815197
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  53815129 aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 53815197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 23299394 - 23299328
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  23299394 gatgaggttcattcgacattgattaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 23299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 52198464 - 52198529
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 81  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  52198464 gatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaa 52198529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 6922049 - 6922115
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  6922049 gatgaggttcattcaacattggtgaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 6922115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 16185504 - 16185434
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  16185504 agcacaggatgaggttcactcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttagg 16185434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 18645589 - 18645519
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  18645589 agcacaggatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacacgattttagg 18645519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 54736699 - 54736631
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    |||| ||||||||||| |||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  54736699 agcataggatgaggttcattcggtattggttaaaacgtgtcacgatgtctatttcgtgacacgatttta 54736631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 538175 - 538237
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  538175 atgaagttcattcgacattggttaaaacgtgttacgatggttatttcgtgacacgattttagg 538237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 10884170 - 10884240
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||| ||||| ||||||||||| ||||||||||||| |||| | |||||||||||||||||||||    
T  10884170 agcacaggattaggttcattcgacattgattaaaacgtgtcatgatggccatttcgtgacacgattttagg 10884240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 54460552 - 54460601
Alignment:
Q  33 attggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  54460552 attggttaaaacgtgtcacgatggctatttcgtgacacgattttaagaac 54460601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 8462389 - 8462338
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  8462389 attcgacattgattaaaacgtatcacgatggctatttcgtgacacgatttta 8462338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 42354930 - 42354887
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  42354930 ttgaggagcaacgccgacatcgacgaaactctatcggtttattt 42354887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 10107467 - 10107405
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||| ||| |||||||||||||||| || ||||||  ||||||||||||||||||||||    
T  10107467 atgaagttaatttgacattggttaaaacgcgttacgatggttatttcgtgacacgattttagg 10107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 55032506 - 55032462
Alignment:
Q  261 atgacctatataa-gaaagctagcaggcgtcactcttggatatac 304  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  55032506 atgacctatataaagaaagctagcaggcatcactcttggatatac 55032462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 538582 - 538625
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||||||||| || ||||||||||||||| ||||||||||    
T  538582 ttgaggagcaacgtagaaaacgacgaaactctaacggtttattt 538625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 17537515 - 17537578
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatt 89  Q
    |||||| |||| | ||||||||||||| | || ||||||||||||||||| || ||||||||||    
T  17537515 attcgatattgatgaaaacgtgtcacggttaccatttcgtgacacgatttgagaaaccctaatt 17537578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 10880946 - 10881010
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  10880946 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 10881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 31548721 - 31548785
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  31548721 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 31548785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 5540843 - 5540587
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatt----- 103  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||         
T  5540843 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacatgattttaggaacc-taatttgaaagtatttattgtttt 5540745  T
Q  104 ---tattttggtattgtgaattaaacaaaaggaaaatagaccacaagaagtagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcat 200  Q
       | |||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5540744 tttttttttggtagtgtgaattaaacaaaaggaaaatagaccacaggagttagtttgggggcgctggaatcaaaagaagattgggctttaaaccaagcat 5540645  T
Q  201 tgatgtgctaaatggatcaatgagaaggactaaggaattgaccgtaaataacatgctt 258  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  5540644 tgatgtgctaaatggatcaatgagaaggattaaggagttgaccgtaaataacatgctt 5540587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 23612748 - 23612880
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattttggtattgtgaattaaa 125  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| || |||| |||||||||||| ||||| |  |||||||||||    
T  23612748 attcgacattgtttaaaacgtgtcacaatggctatttcgtgacacgattttaggaaccttagtttggaagtatttattt-ttttgatggtgtgaattaaa 23612846  T
Q  126 caaaaggaaaatagaccacaagaagtagtttggg 159  Q
    |||||| |||| ||||||||  ||||||| ||||    
T  23612847 caaaagaaaaacagaccacataaagtagtatggg 23612880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 17895358 - 17895273
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtattta 101  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||    
T  17895358 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaactctaatttgtaagtgttta 17895273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 25595525 - 25595459
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25595525 gatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 25595459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 33878078 - 33878013
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33878078 atgaggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 33878013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 25592340 - 25592274
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25592340 gatgaggttcattcgacattggttaaaacgtgttacgatgactatttcgtgacacgattttaggaac 25592274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 10663171 - 10663250
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagt 96  Q
    |||||||| | ||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| ||||    
T  10663171 atgaggttcaatcgacattggttaaaacgtgtcacgatggatatttcgtgacacgattttaggaatcctaatttgcaagt 10663250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 18722151 - 18722085
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  18722151 gatgaggttcattcgatatcggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 18722085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 43682640 - 43682575
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  43682640 aggatgaggttcattcgacattggttaaaacgtgtcacgacggctatttcgtgacacgattttagg 43682575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 45156766 - 45156693
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||    
T  45156766 agcacaggatgaggttcattcgacattgattaaaacgtgtcacaatggctatttcgtgacacgattttaggaac 45156693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 20520109 - 20520173
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttag 78  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  20520109 aggatgaggttcattcgacattggttaaaacgtgtcacaatggctatttcgtgacacgattttag 20520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 25228171 - 25228234
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  25228171 gatgaggttcattcgacattggttaaaacgtgttacgatggttatttcgtgacacgattttagg 25228234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 18721789 - 18721746
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  18721789 ttgaggagcaacgccgacaacgacgaaactctatcggtttattt 18721746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 25595165 - 25595122
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  25595165 ttgaggagcaacgccgacaacgacgaaactctatcggtttattt 25595122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 422 - 460
Target Start/End: Original strand, 23613157 - 23613195
Alignment:
Q  422 gagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23613157 gagcaacgtcgacaacgacgaaactctatcggtttattt 23613195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 422 - 460
Target Start/End: Complemental strand, 25591976 - 25591938
Alignment:
Q  422 gagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25591976 gagcaacgtcgacaacgacgaaactctatcggtttattt 25591938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 18696448 - 18696405
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  18696448 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 18696405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 30640685 - 30640734
Alignment:
Q  33 attggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||| ||||    
T  30640685 attggttaaaacgtgtaacgatgtgtatttcgtgacgcgattttaagaac 30640734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 320 - 460
Target Start/End: Original strand, 26706 - 26846
Alignment:
Q  320 acggttttgggaagaaaacgaagccgcacgcgttacgagagaggggaaggcacatgaacatagaagaacttcatcaacagtagcgattggaattaatttg 419  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26706 acggttttgggaagaaaacgaagccccacgtgtcacgagagaggggaaggcacatgaacatagaagaacttcatcaacagtagcgattggaattaatttg 26805  T
Q  420 aggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26806 aggagcaacgtcgacaacgacgaaactctatcggtttattt 26846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 26397 - 26467
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  26397 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtaacacggttttagg 26467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 311 - 460
Target Start/End: Original strand, 39191934 - 39192083
Alignment:
Q  311 tcacattttacggttttgggaagaaaacgaagccgcacgcgttacgagagaggggaaggcacatgaacatagaagaacttcatcaacagtagcgattgga 410  Q
    |||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39191934 tcacgttttacggttttgggaagaaaaagaagccacacgcgtcacgagagaggggaaggcacatgaacatagaagaacttcatcaacaatagcgattgga 39192033  T
Q  411 attaatttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  39192034 attaatttaaggagcaacgtcgacaacgacgaaactctatcgatttattt 39192083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 22937896 - 22937785
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattttggtatt 115  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| || || |||   |    
T  22937896 gatgaggttcattcgacattgattaaaacgtgtcacgatggctatttcgtgacacgattttaggaaccctaatttggaagt-tttactttttgtgg---t 22937801  T
Q  116 gtgaattaaacaaaag 131  Q
    ||||||||||||||||    
T  22937800 gtgaattaaacaaaag 22937785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 21336569 - 21336497
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 81  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21336569 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 21336497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 28788243 - 28788179
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttag 78  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28788243 aggatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttag 28788179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 21827863 - 21827796
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 81  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21827863 aggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 21827796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 32837235 - 32837305
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32837235 agcataggatgagtttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 32837305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 37214918 - 37214991
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  37214918 agcacaggatgaggttcattcgacattggttaaaacgtgtcatgatggctatttcgtgacacgattttaggaac 37214991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 40916718 - 40916654
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  40916718 attcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttacgaaccttaattt 40916654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 21333536 - 21333481
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 81  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21333536 attcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 21333481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 39191488 - 39191556
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||| ||||    
T  39191488 aggatgaggtttattcgatattggttaaaacgtgtcacaatgtctatttcgtaacacgattttaagaac 39191556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 14376702 - 14376638
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatt 74  Q
    |||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  14376702 agcacaggatgaggttcattcgacattg-ttaaaacgtgtcacgatggctatttcgtgacacgatt 14376638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 42061645 - 42061708
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||| ||||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  42061645 gatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacatgattttagg 42061708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 43490945 - 43491015
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||| | ||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  43490945 agcacaggatgaggttcatttggcattggttaaaacgtatcacgatgtctatttcgtaacacgattttagg 43491015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 31863031 - 31863092
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    ||||| ||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  31863031 gatgaagttcattcgacattgtttaaatcgtgtcacgatggctatttcgtgacacgatttta 31863092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 28442029 - 28441961
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    |||| ||||||||||| | || ||||||| |||||||||||| |||| |||||||||||||||||||||    
T  28442029 agcacaggatgaggttcactcaacattggctaaaacgtgtcatgatggctatttcgtgacacgatttta 28441961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 7270399 - 7270463
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| ||| ||| |||||||    
T  7270399 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatagaaactctaattt 7270463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 19861135 - 19861043
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtattta 101  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  19861135 agcacaggatgaggttcattcgacattggttaaaacgtgtcaagatggctatttcgtgacacgattttaggaaccctaatttgtaagtgttta 19861043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 33410801 - 33410729
Alignment:
Q  18 tgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33410801 tgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaaccctaattt 33410729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 3798642 - 3798571
Alignment:
Q  11 caaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3798642 caaaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 3798571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 40617653 - 40617542
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagtatttatttattttggtatt 115  Q
    ||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| || || |||   |    
T  40617653 gatgaggttcattcgacattgattaaaacgagtcacgatggctatttcgtgacacgattttaggaaccttaatttgaaagt-tttactttttgtgg---t 40617558  T
Q  116 gtgaattaaacaaaag 131  Q
    ||||||||||||||||    
T  40617557 gtgaattaaacaaaag 40617542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 27013399 - 27013463
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27013399 attcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaaccctaattt 27013463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 15431316 - 15431389
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  15431316 agcacaggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 15431389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 15437930 - 15438003
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  15437930 agcacaggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 15438003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 19865491 - 19865410
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||| ||||||||||| ||||||||||||||||||||||  | |||| ||||||||||||||||||||||||||||||||||    
T  19865491 agcacaggatgaggttcattcgacattggttaaaacgtgctaagatggctatttcgtgacacgattttaggaaccctaattt 19865410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 53093873 - 53093957
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaa 94  Q
    |||| ||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  53093873 agcacaggatgaggttcattcgacattggt-agaacgtgtcacgatggctatttcgtgacacgattttagaaaccctaatttgaaa 53093957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 37104109 - 37104039
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  37104109 agcacaggatgaggttcattcgacattggttaaatcgtgtcacgatggctatttcgtgacacgattttagg 37104039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 12237511 - 12237580
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacc 83  Q
    ||||||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  12237511 aggatgaggttcattcgacattggttaaaatatgtcacgatggctatttcgtgacacgattttaggaacc 12237580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 5669788 - 5669848
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgatttta 77  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  5669788 atgaggtttattcgacattggttaaaacgtgtcacggtggctatttcgtgacacgatttta 5669848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 18910763 - 18910826
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  18910763 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcatgacacgattttagg 18910826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 5721819 - 5721749
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  5721819 agcacaggatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacacgattttagg 5721749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 9717103 - 9717173
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| |||||||||||  |||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  9717103 agcacaggatgaggttcgttcgacattggttaaatcgtgtcacgatggctctttcgtgacacgattttagg 9717173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 49269895 - 49269960
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacc 83  Q
    ||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  49269895 atgagattcattcgacattggttaaaacgtgtcacaatg-ctatttcgtgacacgattttaggaacc 49269960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 5680629 - 5680694
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||| ||||||||||||||||||||||||||  |  ||||||| ||||||||||||||||||    
T  5680629 atgaggttcattcgacattggttaaaacgtgtcacttttgctatttcttgacacgattttaggaac 5680694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 48014771 - 48014707
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||| | ||||||||||| |||| |||||||||||||| ||||| | | |||||||||    
T  48014771 attcgacattgatgaaaacgtgtcatgatggctatttcgtgacacaattttggaagccctaattt 48014707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 11703106 - 11703063
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  11703106 ttgaggagcaacgccgacatcgacgaaattctatcggtttattt 11703063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 37103748 - 37103680
Alignment:
Q  392 atcaacagtagcgattg-gaattaatttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||||||| ||||| | | ||||||||| | || ||||| |||||||||||||||||||||    
T  37103748 atcaacagtagcgattgagaattgact-gaggagcaaagccggcaacggcgaaactctatcggtttattt 37103680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 12782286 - 12782350
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  12782286 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 12782350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 19820111 - 19820175
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  19820111 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 19820175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 19826872 - 19826936
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  19826872 attcgacattggtgaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 19826936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 6384 - 6320
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6384 attcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaaccctaattt 6320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 10600120 - 10600188
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10600120 aggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 10600188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 25873355 - 25873428
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25873355 agcacaggatgaggttcattcgacattggttaaaccgtgtcacgatggctatttcgtgacacgattttaggaac 25873428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 38006134 - 38006061
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  38006134 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgatttcaggaac 38006061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 25139881 - 25139801
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttgaaagt 96  Q
    ||||||||| ||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  25139881 gatgaggttcattagacattagttaaaacgtgtcacaatggctatttcgtgacacgattttaggaaccctaatttggaagt 25139801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 25821760 - 25821692
Alignment:
Q  14 aggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25821760 aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaac 25821692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 36809283 - 36809210
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| |||||||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  36809283 agcacaggatgagattcattcgacattggttaaaacgtgtcacgatggctattttgtgacacgattttaggaac 36809210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 26358824 - 26358894
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  26358824 agcacaggatgaggttcattcggcattggttaaatcgtgtcacgatggctatttcgtgacacgattttagg 26358894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 29439727 - 29439797
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  29439727 agcacaggatgaagttcattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 29439797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 25869987 - 25870060
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||    
T  25869987 agcacaggatgaagttcattcgacattgattaaaacgtgtcacgatggctatttcgtgatacgattttaggaac 25870060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 16788553 - 16788609
Alignment:
Q  22 gtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttag 78  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  16788553 gtttattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttag 16788609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 30275523 - 30275467
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  30275523 attcgacattggttaaaacgtgtcacgatggttatttcgtgacacgattttaagaac 30275467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 30925920 - 30925984
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    |||||||||||   |||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  30925920 attcgacattgagcaaaacgtgtcacgatggctaattcgtgacacgatttcaggaaccctaattt 30925984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 1507155 - 1507112
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  1507155 ttgaggagcaacgccgacatcgacgaaactctatcggtttattt 1507112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 1503951 - 1503908
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||    
T  1503951 ttgaggagcaacgccgacatcgacgaaactctatcgatttattt 1503908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 15704492 - 15704449
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  15704492 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 15704449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 15719746 - 15719703
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  15719746 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 15719703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 460
Target Start/End: Original strand, 26365504 - 26365572
Alignment:
Q  392 atcaacagtagcgattg-gaattaatttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||||||||| ||||| | | ||||||||| |  |||||||| ||||||||||||||||||||    
T  26365504 atcaacagtagcgattgagaattgact-gaggagcaaagctgacaacgatgaaactctatcggtttattt 26365572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 61756 - 61823
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacc 83  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  61756 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacc 61823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 45287978 - 45287912
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45287978 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 45287912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45291313 - 45291248
Alignment:
Q  17 atgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45291313 atgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 45291248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 8276171 - 8276234
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8276171 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 8276234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 26556669 - 26556732
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  26556669 gatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcatgacacgattttagg 26556732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 10431538 - 10431608
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  10431538 agcacaggatgaggttcactcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttagg 10431608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 4542226 - 4542298
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| |||||||| || ||||||||||||||||||| ||||||||||  ||||||||||||| |||||||||||    
T  4542226 agcataggatgag-ttcattcgacattggttaaaacttgtcacgatggatatttcgtgacacaattttaggaac 4542298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 2442107 - 2442056
Alignment:
Q  28 tcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  2442107 tcgacattggctaaaacgtatcacgatggctatttcgtgacacgattttagg 2442056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 13810231 - 13810180
Alignment:
Q  40 aaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttg 91  Q
    ||||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  13810231 aaaacgtgtcacgatgactatttggttacacgatttcaggaaccctaatttg 13810180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 17730185 - 17730249
Alignment:
Q  26 attcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||||||||||| |||||||||||||||| | |   |||||||||||| | | |||||||||||    
T  17730185 attcgacattggtaaaaacgtgtcacgatggcaaaaacgtgacacgattatggaaaccctaattt 17730249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 2793451 - 2793521
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2793451 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 2793521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 49499409 - 49499343
Alignment:
Q  16 gatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49499409 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 49499343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 1951193 - 1951120
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1951193 agcataggatgaggttcattcgacagtggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 1951120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 42021881 - 42021945
Alignment:
Q  15 ggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  42021881 ggatgaggttcattcgacattggttaaaacgtgttacgatggctatttcgtgacacgattttagg 42021945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 34733111 - 34733030
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaatttg 91  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||| | |||||||    
T  34733111 agcacaggatgaggttcattcgacattggt-aaaatgtgtcacgatggctatttcgtgacatgattttaggaaacataatttg 34733030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 29644156 - 29644086
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| |||||||| || |||||||||||| |||||||||| |||||| ||||||||||||| |||||||||    
T  29644156 agcacaggatgagattcattcgacattggctaaaacgtgttacgatggctatttcgtgacatgattttagg 29644086  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 387
Target Start/End: Original strand, 30604682 - 30604713
Alignment:
Q  356 gagagaggggaaggcacatgaacatagaagaa 387  Q
    ||||||||||||||||||||||||||||||||    
T  30604682 gagagaggggaaggcacatgaacatagaagaa 30604713  T

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Target: scaffold0270 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 901 - 834
Alignment:
Q  15 ggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  901 ggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 834  T

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Target: scaffold0270; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 4261 - 4194
Alignment:
Q  15 ggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4261 ggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 4194  T

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Target: scaffold0270; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 11391 - 11324
Alignment:
Q  15 ggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaac 82  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11391 ggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaac 11324  T

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Target: scaffold0005 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 291115 - 291185
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  291115 agcacaggataaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtaacacgattttagg 291185  T

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Target: scaffold0015 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 197383 - 197453
Alignment:
Q  9 agcaaaggatgaggtttattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    |||| ||||||||||| ||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||    
T  197383 agcacaggatgaggttcattcgacattgattaaaatgtgtcacgatggctatttcatgacacgattttagg 197453  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 35039 - 34989
Alignment:
Q  40 aaaacgtgtcacgatgactatttcgtgacacgattttaggaaccctaattt 90  Q
    ||||| ||| ||| |||||||||||||||||||||| ||||||||||||||    
T  35039 aaaacatgtaacgctgactatttcgtgacacgatttcaggaaccctaattt 34989  T

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Target: scaffold0062 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 53404 - 53361
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  53404 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 53361  T

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Target: scaffold0062; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 68303 - 68260
Alignment:
Q  417 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 460  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  68303 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattt 68260  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 3676 - 3624
Alignment:
Q  27 ttcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 79  Q
    ||||||||||   |||||||||||||||||| |  ||||||||||||||||||    
T  3676 ttcgacattgaggaaaacgtgtcacgatgacaaaatcgtgacacgattttagg 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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