View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3005_low_4 (Length: 463)
Name: NF3005_low_4
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_4 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 43816216 - 43816671
Alignment:
| Q |
8 |
cagcacagataggatatatgcagatattgactcccaaagacacagcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgcc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43816216 |
cagcccagataggatatatgcagatattgactcccaaagacacagcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgcc |
43816315 |
T |
|
| Q |
108 |
agtatgataaccagataccgtaatgtagcaataagtgatcaagaagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43816316 |
agtatgataaccagataccgtaatgtagcaataagtgatcaagaacacacggaacccatattcataaggcttcaaagttgggtataattttgcataggta |
43816415 |
T |
|
| Q |
208 |
gcgcaaaatccaacaatgaatgtactgattataactataacttcttcccattctcctaccaatgctgataactctcccattccaacagcaagtcctccag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43816416 |
gcgcaaaatccaacaatgaatgtactgattataactataacttcttcccattctcctgccaatgctgataactctcccattccaacagcaagtcctccag |
43816515 |
T |
|
| Q |
308 |
ctgagaatgtccctaatcctctgttaaaccccttgctcagagttgcccctgccaaattccattgcatttttatcataaaataaattgaaaacgttgaagc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43816516 |
ctgagaatgtccctaatcctctgttaaaccccttgctcagagttgcccctgccaaattccattgcatttttatcataaaataaattgaaaacgttgaagc |
43816615 |
T |
|
| Q |
408 |
tcagaaattgacttatgctgaagtaatggatgcatgatggacataaaaaatctact |
463 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43816616 |
tcagaaattgacttatgctgaattaatggatgcatgatggacataaaaaatctact |
43816671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 43830447 - 43830837
Alignment:
| Q |
16 |
ataggatatatgcagatattgactcccaaagacacagcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
43830447 |
ataggatatatgcagatattgactcccaaagagacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaactcaccagtatgat |
43830546 |
T |
|
| Q |
116 |
aaccagataccgtaatgtagcaataagtgatcaagaagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaa |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| || | ||||||||| ||||| || || |
|
|
| T |
43830547 |
aaccagatactgtaatgtagcaataagtgatcaagaacacacggaaaccatattcataaggctttaaagttggatagagttttgcataagtagcacagaa |
43830646 |
T |
|
| Q |
216 |
tccaacaatgaatgtactgattataactataacttcttcccattctcctaccaatgctgataactctcccattccaacagcaagtcctccagctgagaat |
315 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
43830647 |
tccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctccagctgacaat |
43830746 |
T |
|
| Q |
316 |
gtccctaatcctctgttaaaccccttgctcagagttgcccctgccaaattccattgcatttttatcataaaataaattgaaaacgttgaag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
43830747 |
gtccctaatcctctgttaaaccccttgctcagagttgcccctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
43830837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 43823179 - 43823567
Alignment:
| Q |
8 |
cagcacagataggatatatgcagatattgactcccaaagacacagcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgcc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43823179 |
cagcccagataggatatatgcagatattaactcccaaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgcc |
43823278 |
T |
|
| Q |
108 |
agtatgataaccagataccgtaatgtagcaataagtgatcaagaagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggta |
207 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43823279 |
actatgataaccagatactgtaatgtagcaataagtaatcaagaacacacggaacccatattcataaggcttcaaagttgggtacaattttgcataggta |
43823378 |
T |
|
| Q |
208 |
gcgcaaaatccaacaatgaatgtactgattataactataacttcttcccattctcctaccaatgctgataactctcccattccaacagcaagtcctccag |
307 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
43823379 |
atacaaaatccaacaatgaatgtactgataatcactataacttcttcccattctccagccaatgctgataactctcccattcctacagcaagtcctccgg |
43823478 |
T |
|
| Q |
308 |
ctgagaatgtccctaatcctctgttaaaccccttgctcagagttgcccctgccaaattccattgcatttttatcataaaataaattgaaa |
397 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
43823479 |
ctgacaatgtccctaatcctctgttaaaccctctgttcagagttgctcctgcaaaatttcattgcattttgatca-gaaataaattgaaa |
43823567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 130 - 442
Target Start/End: Original strand, 4999146 - 4999468
Alignment:
| Q |
130 |
atgtagcaataagtgatcaagaagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||||||| |||||||||| ||||| | ||||||||| ||||| || |||||||||||||||| |
|
|
| T |
4999146 |
atgtagcaataagtgatcaagaacacacggaaacgatattcataacgcttcaaagtagggtagagttttgcataagtagcacagaatccaacaatgaatg |
4999245 |
T |
|
| Q |
230 |
tactgattataactataacttcttcccattctcctaccaatgctgataactctcccattccaacagcaagtcctccagctgagaatgtccctaatcctct |
329 |
Q |
| |
|
|||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
4999246 |
tactactaataactataatttcttcccattctccagccaatgctgataactctcccattccaacagcaagtcttccagctgagaatgtccctaatactct |
4999345 |
T |
|
| Q |
330 |
gttaaaccccttgctcagagttgcccctgccaaattccattgcatttttatcataaaataaattgaaaacgttgaag----------ctcagaaattgac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||| |
|
|
| T |
4999346 |
gttaaaccccttgctcagagttgcccctgtcaaattccattgcatttttatcatataataaattgaaagcattgaagctggattcacctcagaaattgac |
4999445 |
T |
|
| Q |
420 |
ttatgctgaagtaatggatgcat |
442 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
4999446 |
ttatgctgaagcaatggatgcat |
4999468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 31807661 - 31807457
Alignment:
| Q |
19 |
ggatatatgcagatattgactcccaaagacacagcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgataac |
118 |
Q |
| |
|
||||||||||| | ||| || || | ||| |||||||||||||| ||||||||||||||||| || | | ||||| |||||| || || || |||| | |
|
|
| T |
31807661 |
ggatatatgcacacatttacgccaacagatacagcagcaccaagagcaatgagcaaaaatctgtttgttgctgtatgaagaaagtctccggttcgatatc |
31807562 |
T |
|
| Q |
119 |
cagataccgtaatgtagcaataagtgatcaagaagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatcc |
218 |
Q |
| |
|
||||||| ||| ||| ||||| ||||||||||| |||||||| ||||||||||||| ||||| ||||| |||| ||||||||| || || |||||||| |
|
|
| T |
31807561 |
cagatacaataacgtaacaataggtgatcaagaacacacggaatccatattcataagccttcattgttggatatagttttgcatatgtggcacaaaatcc |
31807462 |
T |
|
| Q |
219 |
aacaa |
223 |
Q |
| |
|
|||| |
|
|
| T |
31807461 |
tacaa |
31807457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 31807294 - 31807229
Alignment:
| Q |
294 |
agcaagtcctccagctgagaatgtccctaatcctctgttaaaccccttgctcagagttgcccctgc |
359 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| | || ||||| |||||||| ||||| |
|
|
| T |
31807294 |
agcaagtcctccagctgataaagtccctaatcctctgtttagacctttgctaagagttgctcctgc |
31807229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 130 - 442
Target Start/End: Original strand, 34803955 - 34804277
Alignment:
| Q |
130 |
atgtagcaataagtgatcaagaagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| ||||| | ||||||||| ||||| || |||||||||||||||| |
|
|
| T |
34803955 |
atgtagcaataagtgatcaagaacacacggaaaccatattgatatggcttcaaagtagggtagagttttgcataagtagcacagaatccaacaatgaatg |
34804054 |
T |
|
| Q |
230 |
tactgattataactataacttcttcccattctcctaccaatgctgataactctcccattccaacagcaagtcctccagctgagaatgtccctaatcctct |
329 |
Q |
| |
|
|||| | |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34804055 |
tactactaataactataatttcttcccattcttcagccaatgctgataactctcccattccaacagcaagtcctccagctgagaatgtccctaatcctct |
34804154 |
T |
|
| Q |
330 |
gttaaaccccttgctcagagttgcccctgccaaattccattgcatttttatcataaaataaattgaaaacgttgaag----------ctcagaaattgac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||| |
|
|
| T |
34804155 |
gttaaaccccttgctcagagttgcccctgtcaaattccattgcatttttatcatataataaattgaaagcattgaagctggattcacctcagaaattgac |
34804254 |
T |
|
| Q |
420 |
ttatgctgaagtaatggatgcat |
442 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
34804255 |
ttatgttgaagcaatggatgcat |
34804277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 442
Target Start/End: Original strand, 34804378 - 34804412
Alignment:
| Q |
408 |
tcagaaattgacttatgctgaagtaatggatgcat |
442 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34804378 |
tcagaaattgacttatgctgaagcaatggatgcat |
34804412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University